RNA id: XM_043237596.1


Basic Information

Item Value
RNA id XM_043237596.1
length 1432
RNA type mRNA
GC content 0.42
exon number 3
gene id spi2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9086544 ~ 9088361 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTACAAATgagtaaatgcaaatgtatttaaacacacGGCGTACAAGTTACATTATAATTAGTATGCTtcagctgaataaaaatgcttgtCAGTTCACTTTGCATTTCAAAGAGATAACTTAAGAAATATCGGTGCACTTAAGAGGGTCAAATCAAGTGGGTTTAACAATTATTGAAATGATagcacaatttaatttaaatgcaaaatgcaattaaGTGTGTGAGCTGAAAGTAACATTTACTTTCAGCTCACACCTAAGCATATTCCTTTTAagactattattaataatcagttctcttttttaaaaaaatatgcaaattctgTGCATGCCTTTTTCTAATAAATAGTGTCCGAAAAAAAAgctattgatttaaaaatacactgacaTTATGAGCCCGAGTATCCTCACTAGCTGGTTTTGTAACGCACTGGCAGCAAGGGATCTCTCCGCCGTGTCAACCACTGAAGATATGGACATATCTAGAGAGAAGCTACCTGCCGGGGAACATTTTAACGATGcgttagaaaaagaaaagtccCGGCTGCATCTTCCCGCACCTTCACCTCGGCAGGCCGTGGGATCTCCGGCCAAGGCAAACGGACCTGGCCTGTACACAGACTGTGGAATGAAATGCAACAATAACGCCGTCGATCAGTCAGAGGTCCTTTACAGCGCACCCGACGGGCAAGAGTTAAACGCCTTAAACGGACCAGAGAGACCTTTAACTCTGAACGCAGCACCTGAAAAGTGTGCCGAATCATTGCCCAGCATTACACCTGCAGAGAAAGGGAAAAAGCTACGTCTTTTCCACTTCCTGTTCGAGATGCTGGAGGACCCCGGCATGGCCCAGTGTGTGTCCTGGGTGCCCGCTTCGGCGGGCGTCTTCCGCTTTTCTGCCAGACACAAGGAGCGCGTGGCCGAGCTCTGGGGCCAGAGGAAGGGCAACAGGATGCCCATGACCTACCAGAAAATGTCCCGCGCACTGCGAAATTACGCCCGCTCGGGGGAGATcattaaagtgaaaaagaaacTGACTTATCAGTTTAGCTTAGCAACCCTCTCTACTTTACAGAGGCAGCGCGGCGTAACCAAAGCAGCATGCGGGTCAAAATAGGGACTGGACGATTGTCTCAAGTTTGTTACCGTCATTATTTCTCATGATATCTCAATTGCTTTGGTAACAAGAGGAGGGTAAAATTAGTTTCTATTTGTAAGACTGTGGTGTTTTGCATTGCATGGGTTTGTGCTGTTCTTTACATATCttgatgtatttaaaacaaaaaaaagtgtgtcttaaaaaacaaaacaaacattttataaataaataaaatattcatatatacagtatatatatatagtgaaccTATTCActtttttactgtttctttctcacttttttAAGCTGCCGTTTTAAAGtggcaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40644 lncRNA downstream 62467 9023877 ~ 9024077 (-) True G27425
TU40633 lncRNA downstream 82321 9003923 ~ 9004223 (-) True G27417
TU40451 lncRNA downstream 125111 8960446 ~ 8961433 (-) True G27306
TU40406 lncRNA downstream 198591 8887186 ~ 8887953 (-) True G27279
TU40401 lncRNA downstream 215488 8870491 ~ 8871056 (-) False th2
XR_006250778.1 lncRNA upstream 241646 9330007 ~ 9341739 (-) True LOC122343442
TU40714 lncRNA upstream 410355 9498716 ~ 9504000 (-) True G27469
TU40803 lncRNA upstream 456847 9545208 ~ 9545421 (-) True G27532
XR_006250616.1 lncRNA upstream 459278 9547639 ~ 9552161 (-) True LOC122342618
XR_006250615.1 lncRNA upstream 459278 9547639 ~ 9552158 (-) False LOC122342618
XM_043236746.1 mRNA downstream 4495 9049521 ~ 9082049 (-) False mybpc1
XM_043236748.1 mRNA downstream 4495 9049521 ~ 9082049 (-) False mybpc1
XM_043236747.1 mRNA downstream 4495 9049521 ~ 9082049 (-) False mybpc1
XM_043236745.1 mRNA downstream 4495 9049521 ~ 9082049 (-) False mybpc1
XM_043236744.1 mRNA downstream 4495 9049521 ~ 9082049 (-) False mybpc1
XM_043237598.1 mRNA upstream 1229 9089590 ~ 9092106 (-) True spic
XM_043237597.1 mRNA upstream 9544 9097905 ~ 9100722 (-) True dnajb9b
XM_043237065.1 mRNA upstream 15215 9103576 ~ 9106985 (-) True avpr2l
XM_043237048.1 mRNA upstream 15220 9103581 ~ 9269835 (-) False anks1b
XM_043237054.1 mRNA upstream 15220 9103581 ~ 9269831 (-) False anks1b
XR_006250745.1 other downstream 77240 9004260 ~ 9009304 (-) False klhl42
XR_006250786.1 other downstream 145273 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other downstream 145273 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other downstream 145273 8895792 ~ 8941271 (-) False LOC122343470
TU40311 other downstream 618516 8460506 ~ 8468028 (-) True G27232
XR_006250565.1 other upstream 183611 9271972 ~ 9300179 (-) False uhrf1bp1l
TU40990 other upstream 1267350 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 1270063 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 2333708 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 2338136 11426497 ~ 11545812 (-) False ppfia2

Expression Profile