RNA id: XM_043237638.1


Basic Information

Item Value
RNA id XM_043237638.1
length 3186
RNA type mRNA
GC content 0.43
exon number 15
gene id hcls1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11575175 ~ 11582303 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCTGGTCCCGAGCAGGAGCTGGTCTCTTAGGACCAACACATAACCAGGAGGCCAGCTTCAAAACAACCTAACCGGCATATAAATGCCTGCACGTCCGGAGATGAGCACAGGGTCGAAGAGAGATTTCATATACCAACTTAAAAAAGCACTAGCAATCTTGGTGGAAACTAACCCACAATGCAATGTCTCCAAGAAATACTGGACGATTGTCTACCGGTGGTCTAGCAACGACCCAGCCATCCAGGAAAGCCACCACCTGCGGTTCACAATCTGTTCAGAATCTTCTATTTATACAGTTTTGTGTCTAAGCTTCATATCTGGCCCAAACGCAAAATATGTCATAAATACTAGAATCATTATGCTTGtattgcaaattaattaatCTGCGTCTTGATGAGTGAGTGTTTAGCGTATGTCTATGCTTTATTTAACGTGTCCAAATGCGCAGGTACGACGGAGTTGCGCGTGAACGCGtcgcttcttcttcttcttcttcttcttcttcttcttctgcagtCGGTCGGACGCAGGTCTGATCTGCAGTTCAAACTCACTCACATTTGGACATTTATCGGACATAAAGAGACGGGAAAAGCATTAAAACATGTGGAAATCTGTGGTGGGACATGATGTTAATGTGAAGGTTGAATCGGAGGGGGATGACTGGGAAACGGATCCGAATTTTGAGaatGATGTATCAGAGCAGGAACAGAGATGGGGTTCCAGAACCATAGAAGGATCGGGTCGAAAAGAACACATCAGCATTGCAGATCTCAGGCAGAATGTGTCTCGGGAGCATGAGGTGGTTAAGAAGAAAGAGCTGGACCAGGGCCCTAAGGCCTCTTACGGCTACGGAGGGAAATTTGGAGTCGAGAAAGACAGAATGGACAAGGGTGCTTTAGGGCACGGCTATGTGGCAGAGGTGGAAAAGCACTCGTCCCAGACAGATGCGGCGAAGGGCTTCGGGGGGAAATTCGGTGTGCAGAAGGACCGCGTGGACAAGTCTGCCATGAACTACGAGTATAAGGGTGATGTACAGCAGCATGCGTCTCAAAAAGATTACGCTGCAGGTTTTGGTGGGAAGTATGGCGTGCAGAAGGAGAGGGTCGACAAGGCCGCAGTGGGCTACGATTACAAAGGAGAGACCGAGAAACACCAGTCACAGAAAGACTACGCAAAAGGCTTCGGGGGGAAGTACGGtgttgaaaaagaaaaggttgACAAGGCCGCTCTGGGTTACGACTACAAAggagaaacagagaaacatcAGTCACAGAAAGACTACGCGAAGGGTTTTGGAGGACGTTATGGAGTCGAAGCAGATCGCATGGATAAGAGTGCAGCTTCTTTCGGTGATATGGAGTCACCTTCGTCATCTTATGAAAAGCCTCAGGCTTTCGAGGGCTCAAGTGTGGGAGCTGGAAACCTTAAGGCTCGGTTTGAGAACATGGCGAAGGCCTCAGATGAGGAGGACAGAAAGAAAGCAGAGGAGGAGAGAGCCAGAAGAGTCGCCCGGGAGAAAAGAGAACGAGAAGAGGCTCAACGCAAACAAGAGGAGCAGAGCAAGtgtgaagaggaggaagagaaccAGAGACCACCTCCTCCTGTTCCAGCATCCCAGAATCCTCCAGAGACATTCAGAAAACTACCGGAAATTCCCAGAGATGAACCAGAGGAGGTCGCTCAGgtggaTCCCGACTATGAGGAGCCACCGTTGCTGCCGCCCCGCTCAGCTGACCTGatggaagaggaagaggaggaagagcagACTTACTCTGAATGCGACCCGCCCCCTGTACCTCAGGAAGAAGACTATGAGGATATCGGCTCATGCACTGCTGCAGCCGTTGATAACGACTATGAAGATCTAAGCGGGGGAGGACATACAGCCACGGCCGTTTATGACTACCAAGGAGAGGCCAGTGACGAGATCTCCTTCATGCCGGGGGACGTCATCACTAACATCGAGATGATCGACGAGGGTTGGTGGAAAGGAACGTGTCACGGTCGCACAGGCCTGTTTCCTGCCACTTTCGTGGAGCTCCAGTAGTTGCTTGTTACCACCGATCAGACTTGTTTTGTTAGCCATTTGCAGacaattgtttttattgcatttttaggaAATACGAGTGCAATATACTAATATGTACAGAATGAAAAATGAGCTTGCGTCTATTAGCTGAGCAGAACCGTCCGTTCGGAGCACACGATTATTAACCGGATGGATTCGCATTTTTTCCATAAAGATTTGagatgtatatgaatatatacactgCTGTTCACAGGTTCGGGGTCTTGTAGGGTTTTTGAAAGGCtgttatgctcaccaaggctgcattcatttgatcagaaatacgtTAATATAGCTGAAACATTACcaattaattttgtttcattgtatttgaaatgtaaGTTATTTCTATGATTACATCAGTCTTCATTGTCATGTGATCCTTCTGAAATCCTACTAATATGCTGACTAACAGTTGCAATTGatatttgtgtgaaatattttcaggACTCTTGGGTGAGTAGTATGTTCAtaaattgaaatagaaatcttgtgcatgtatttactattacttctgatcaactgaatgcattgtttttgtattacagtattaatattGCCCCAGATCTTTGAATGATAGTGTATAAAAGAACGTCAAATAAGTGTTTAAGTACAGTAttcagtaacttttttttagccAACTTAAGTCttacaatatgaaaaatactaatactatttttttttcctcctgatCAATTTCTTAATGCAGTttttgtattactgtattaatataaaatattatatccCCAGATTTTTGAACAATagcgtataaaaaaaaatagtcagtGTTCAACTCTCAGTTctacaatatgaaaaatattgtgCAAATATGGAATGTTAAATATTAGTTGAAAAGCTGTTAATGGTTTTAAGTGGGGAATGTCATCAGTTACCagttttctaaacatttttgcatCGAATTAGATTTACTCGTGCGCTAATATATTGTCTGGAGAACCTTAATTTGCTATTATAAAAGACTTGTTAAAGACTTGAAATGTTAAGAATATACCATGCTGCCTTGCAGAGAGATACACAAGCCACTGCTCTTTATTGACTCGatgttgtgcatttttattgatcacaaaataaaactaaatcctCCATAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41527 lncRNA downstream 152589 11422069 ~ 11422586 (-) False ppfia2
TU41512 lncRNA downstream 155811 11415100 ~ 11419364 (-) False ppfia2
TU41464 lncRNA downstream 315692 11126502 ~ 11259483 (-) False G27974
XR_006250738.1 lncRNA upstream 36215 11618450 ~ 11648423 (-) True LOC122343274
TU41543 lncRNA upstream 71237 11653472 ~ 11654940 (-) False kmt2e
TU41551 lncRNA upstream 103497 11685732 ~ 11688800 (-) True G28029
TU41482 lncRNA upstream 198724 11780959 ~ 11804910 (-) True G27987
XR_006250628.1 lncRNA upstream 212048 11794283 ~ 11820297 (-) True LOC122342677
XM_043237619.1 mRNA downstream 1409 11414720 ~ 11573766 (-) False ppfia2
XM_043237620.1 mRNA downstream 1409 11414720 ~ 11573766 (-) True ppfia2
XM_043237624.1 mRNA downstream 29363 11414720 ~ 11545812 (-) False ppfia2
XM_043237615.1 mRNA downstream 29363 11414720 ~ 11545812 (-) False ppfia2
XM_043237613.1 mRNA downstream 29363 11414720 ~ 11545812 (-) False ppfia2
XM_043237601.1 mRNA upstream 527 11582762 ~ 11602022 (-) False golgb1
XM_043237600.1 mRNA upstream 527 11582762 ~ 11602022 (-) True golgb1
XM_043237642.1 mRNA upstream 25075 11607310 ~ 11617489 (-) False orc5
XM_043237643.1 mRNA upstream 25075 11607310 ~ 11617376 (-) False orc5
XM_043237641.1 mRNA upstream 25075 11607310 ~ 11617376 (-) False orc5
XR_006250735.1 other downstream 29363 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 151092 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1211609 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1217970 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2274996 9271972 ~ 9300179 (-) False uhrf1bp1l
TU41650 other upstream 432396 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 899685 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 899867 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1734697 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1734697 13316932 ~ 13361938 (-) False tmcc3

Expression Profile