RNA id: XM_043237642.1


Basic Information

Item Value
RNA id XM_043237642.1
length 1816
RNA type mRNA
GC content 0.50
exon number 14
gene id orc5
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11607310 ~ 11617489 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTAGCGCCAGATGTCACGGTGATTCGTTCAGCGCGGATGTGGCAGTCTGTCCGTGACTCCAACGATGTTCTCTTCCAGCTCTCTTCTCATTCAGCCTCTACGCATCCGCATCGCCCAGCCAAGCGATCTCATTAAGATAATGTCTGAGACGCCGCCGTGTGCCGGTTATCCCGAGGACACCCTGCGCTCTCTGGCTCACAGACTGCCATGCAGAGAGGTCCAGCTCAAGTCACTGCTATCACTCATGGGACAGCCAGATCAATACAGTTATCCTTCGATCTTCATCTACGGCCACAGAGCAACGGGGAAGAGTCACGTGGTGCTCTCCATCATGAAAGACTTGGAGctgccCCACGCGTCAGTGAACTGTGTTGAGTGCGTGTCCAGCGGGCTTCTCTTCCACCAGGTGCTGTCTGCCTTTTCCGGGGCCGATGCTGCAGCGCTGCTTCCCCGTTGCCCGTCTTTGTCCGATTTTGTGCGACTGTACAAACAAGCGAGCTCCGGCTCACCTGCCGCTCAGACACGCTACATAATTCTGGACCGAGCCGAACGCATGAGAGATATGGATTTTGGTCTGCTTCCTGCTCTTCTGCGCCTGCAGGAACTGGTAAATGATAATGTGACGGTCATATTGCTCAGCGAAATTGTGTGGGAAAAGTTTCGTCCCAACACTGGATGCTTCGAACCTCTGCTCTTTAATTTTCCAGACTACAGTAAAGCGGAGCTGGTGCAGATTCTGTCTCAGGATCATCACCCATCCTACACGCCTGAGCTCTACGCTTCCTACGTCAACATCCTGCTGGGGGTCTTCTTCTCCGTGTGCAGAGATCTGAGAGAGCTCAGGCACCTGGCTGCCCTGAATTTCTCCAAGTTCTGTGAACCCCTGGAGAAAGGAGaagCCAAAGAGAGTGATATTCACAAGTTATGGAAAAACATCGAGCCCCATCTGCAGAGAGCCATGCAGACGGTTTACCTCCGAGAGGTGTCCAGCATGCAGTGGGAGCAGCAGCAGATGGACGAGAAGGAGGCCACGACCCTCAGAGGTTTATCAGCACACGCTCACATAGAGCTGCCGTATTACTCCAAGTTTCTGCTGATCGCTGCATACCTGGCGTCCTTTAACCCTGCCCGCACAGACCGCCGCTTCTTCCTCAAGGTGCATCGGAGCATTTTGATCTCTTTGTTATGTGTCATGAGTCATGTGATCACTAACAAACAAAGCCTGTCTTTGCTTCAGAGTCACGGGAAGATAAGAAAGACCAATTTCTTGAAGAAACACGAGAAGACTAGTAACCATCTGTTGGGGCCGAAGCCTTTTCCTCTTGACAGACTGTTGGCCATATTCTACAGCGTGGTCGACAGCAGGGTTGCACCTACAGCCAGTATCTTCTCGCAGATTTCGTCTCTAGTGACCCTGCAACTTCTCTCTCAAGTGGGGCACGATGACCAGCTGGACTCGCCCAAGTACAAATGTGCAGTTTCACTGGACTTCATTCTCGCGATCTCCAGAACTGTGGGCTTTGATGTGGTCAAGTATCTGTACGACTTCCTGTGATCCTCTTGCAGCGGACATGAACCCGGCATCTAAGCGGACAAAGACACATCACATGAAATTATGGACATGAATGGAATGctttagaaaaatgtgttacaggattcctgcatttttttttttttttttttttttttgtccaatcaGATGCAACCATGGGAAATACTCATCGTTTGTAAAAGAGACTGGGTTTGGTGCGTTAACATGTGACACCACTTAATATCAGTCCAATAAATACTGTatagtttgtaataaaatgaa

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41527 lncRNA downstream 184724 11422069 ~ 11422586 (-) False ppfia2
TU41512 lncRNA downstream 187946 11415100 ~ 11419364 (-) False ppfia2
TU41464 lncRNA downstream 347827 11126502 ~ 11259483 (-) False G27974
XR_006250738.1 lncRNA upstream 961 11618450 ~ 11648423 (-) True LOC122343274
TU41543 lncRNA upstream 35983 11653472 ~ 11654940 (-) False kmt2e
TU41551 lncRNA upstream 68243 11685732 ~ 11688800 (-) True G28029
TU41482 lncRNA upstream 163470 11780959 ~ 11804910 (-) True G27987
XR_006250628.1 lncRNA upstream 176794 11794283 ~ 11820297 (-) True LOC122342677
XM_043237601.1 mRNA downstream 5288 11582762 ~ 11602022 (-) False golgb1
XM_043237600.1 mRNA downstream 5288 11582762 ~ 11602022 (-) True golgb1
XM_043237637.1 mRNA downstream 25007 11575175 ~ 11582303 (-) True hcls1
XM_043237639.1 mRNA downstream 25025 11575175 ~ 11582285 (-) False hcls1
XM_043237638.1 mRNA downstream 25075 11575175 ~ 11582235 (-) False hcls1
XM_043237602.1 mRNA upstream 35981 11653470 ~ 11683862 (-) True kmt2e
XM_043237629.1 mRNA upstream 73633 11691122 ~ 11710502 (-) False kdm7aa
XM_043237630.1 mRNA upstream 73633 11691122 ~ 11709523 (-) True kdm7aa
XM_043236999.1 mRNA upstream 167857 11785346 ~ 11792920 (-) True cd36
XM_043237927.1 mRNA upstream 213268 11830757 ~ 11840052 (-) True nup107
XR_006250735.1 other downstream 61498 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 183227 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 1243744 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 1250105 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 2307131 9271972 ~ 9300179 (-) False uhrf1bp1l
TU41650 other upstream 397142 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 864431 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 864613 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 1699443 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 1699443 13316932 ~ 13361938 (-) False tmcc3

Expression Profile