RNA id: XM_043237663.1



Basic Information


Item Value
RNA id XM_043237663.1
length 499
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC122343283
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3017632 ~ 3018211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTCTGATAGCACTGGCTTTATAAAGGGGCAGAGGATCAGGAATTATTTATACAGACTCTAATACTACAGTGCGTCATGGCGGTGTCCGGTCATCTCGGGTTGGCGTCTCTGGTCGTGTTGATGCTGGCGTCTCAGCTGGACTTTTCCAGCGCCGCCGTGCTCGTGTATGACTTGCACGCCAACAACCTGTCCGGTGATGCTGCTGGAAACAAACCCGATCCGTACCTCAAGATCTGGTGTGGTGGCTCTTTCGAGGATACAAATTACATCAAAGATAATTCTAATCCTCAGTGGACAGAGAGCTTCACCTTCTCAAGCTGTGATTCCGGCGACAAACTGAAGATGGAGGTGTGGGACAAAGACACGACGTCTGACGATCACTTGGGCTGGTACAGTGGACCGGTGGGAATCGGAAACAACaatcacatttctttttctgttggACAAGGCACTATGTATTTAAGCTACGATGTGAAATAAATCTGCTCCAAACACGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38062 lncRNA downstream 5418 3006770 ~ 3012214 (-) True ccdc3a
TU38074 lncRNA downstream 21174 2980159 ~ 2996458 (-) True G25625
XR_006250774.1 lncRNA downstream 479626 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 480174 2535072 ~ 2537458 (-) False LOC122343423
TU37702 lncRNA downstream 544598 2472284 ~ 2473034 (-) False LOC122342907
XR_006250573.1 lncRNA upstream 98193 3116404 ~ 3117297 (-) True LOC122342459
XR_006250572.1 lncRNA upstream 99268 3117479 ~ 3119550 (-) True LOC122342458
TU38132 lncRNA upstream 362447 3380658 ~ 3676399 (-) True G25673
XR_006250643.1 lncRNA upstream 384613 3402824 ~ 3403502 (-) True LOC122342758
XR_006250642.1 lncRNA upstream 398376 3416587 ~ 3417917 (-) True LOC122342757
XM_043237125.1 mRNA downstream 4273 3012766 ~ 3013359 (-) True si:ch211-240l19.8
XM_043237124.1 mRNA downstream 10840 2999882 ~ 3006792 (-) False ccdc3a
XM_043237077.1 mRNA downstream 79615 2935107 ~ 2938017 (-) False nudt5
XM_043237076.1 mRNA downstream 79617 2935107 ~ 2938015 (-) True nudt5
XM_043237074.1 mRNA downstream 82656 2927805 ~ 2934976 (-) False mcm10
XM_043236920.1 mRNA upstream 881 3019092 ~ 3021512 (-) True LOC122342805
XM_043237574.1 mRNA upstream 6037 3024248 ~ 3024825 (-) True LOC122343240
XM_043236381.1 mRNA upstream 8860 3027071 ~ 3094405 (-) True wnk1b
XM_043236825.1 mRNA upstream 336158 3354369 ~ 3356141 (-) True LOC122342759
XM_043236824.1 mRNA upstream 382169 3400380 ~ 3402341 (-) True LOC122342755
XR_006250644.1 other downstream 641916 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 641916 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 929053 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1115065 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 1362825 1653591 ~ 1654807 (-) False ccdc167
TU38086 other upstream 2851 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 516626 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 530015 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 582789 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 584147 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile