RNA id: XM_043237668.1


Basic Information

Item Value
RNA id XM_043237668.1
length 2185
RNA type mRNA
GC content 0.45
exon number 13
gene id hm13
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25762532 ~ 25778521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagaggaggcgGGGATCTAAGAGACTACGCCGGCTGAGTTAGGAAACGTGGCCTTAAGAGAGATTTCAGCTCAGCTCAATGAGAAGCGTACACAGCTGACGTTCTCAGTGCATCTGTATTTAAGGTTCGCAGTGTTCGAAGGCGTTGGAACATGGCTGACGTGGAGCAGAACGCAGCGGTGCCGGACGCAGCCGCTAACGGGTCGGATGCAGTGAACGGGACCGCGGGCCGGTTCGTGTCCAGCGCCGAGGGCACCGCGCTGGCGTACGGCAGCTTGCTGCTCATGGCCCTGCTGCCCATCTTCTTCGGAGCGCTCAGGTCCGTGGGCTGCTCCAAGAGCAAGAATGCTTCAGATATGCCCGAGACCATCACTAGCAGAGATGCTGCTCGATTCCCCATCATTGCCAGCTGCACTCTCTTTGGCCTCTATCTCTTTTTCAAGatttTCTCACAGGAGTACATTAACTTGCTGCTGTCCATGTATTTCTTTGTGCTGGGAATATTAGCGCTTTCTCACACAATGAGTCCCTTTATGTGCAGAGTTTTCCCTGCTACCTTGCCAAATAAGCAATACCAGCTGCTGTTCACCCAGGGCTCTGGAGAAAGCAAAGAGGAGATCGTCAACTATGAGTTTGACACAAAGGATCTGATATGCCTCGGAATCAGCAGTGTAGTCGGGGTCTGGTACGTCCTCAAAAAGCATTGGATAGCCAATAACCTGTTTGGTTTGGCTTTTGCCCTGAATGGAGTTGAGTTGCTCCACCTCAATAATGTCAGCACTGGATGCATCCTGCTGGGAGGTCTGTTTGTTTACGATGTGTTTTGGGTTTTTGGAACCAATGTTATGGTGACGGTTGCCAAGTCTTTTGAAGCCCCAATTAAGTTGGTTTTCCCACAAGATTTGCTGGAGAGAGGTTTGGATGCCAGTAACTTTGCCATGTTGGGACTGGGGGACATTGTCATTCCAGGAATCTTCATTGCTCTGCTCCTGCGCTTTGATGTCAGTTTGAAGAAGAATACACGAACGTACTTCTACACCAGTTTCCTGGCTTACATTTTTGGCCTGGGTCTTACCATATTTGTTATGCACACCTTTAAACATGCTCAgCCTGCTCTGCTGTACCTGGTCCCTGCTTGCGTTGGCTTTCCAGTGCTGCTAGCCCTGTTTAAAGGAGAACTGACCGAGATGTTCAGCTATGAGTCTTCAGACGAGGTTTTGCCCCACACGCCGCGGCTCACTCATTTCCCCACTGTGTCTGGCTCTCCAGCTAGTCTGGCTAACTCCATGCAGAGTTTTGGCCTGTCGACCCCCCACCGCCGCCGACACACACCCTCCGACATGTAACAACCGAGTTCTGCTTTTCCGTTACCGTGTGCTCCCGCCTGTGCAGATACGAAGAGTCTTCACCAGAGGAGGCGGCATCTAAAGAGGAAATAACAGAATCtgataaagacaaataaaagaGCGGGTTAAGCCCTTAGTCATGTCCTAGTGATgtgctcatgtttattttaatgatgtacaACAGCTTGCTCAGTGCCTGTGTGTTCTTCTTGTTCATTTCGTTCAATTCATTTCAActtcaacgtttttttttttttttttttttttccaaggttttattttattattattattattattatcattgtacAGTATTTGACCAGGGTAGAAGTTAGGCTTTCTGAATGTAATGTGTCAGATTGCTctacagatttattaaaaatctgatGTCACAAGTCCGGTACCTATTCCTGTGTAGCTGGTTTCTGTTACTGGTTTTACTGTATGATCTCAGAAGAGATTTCATTTGTGAAACGTAAGTAATATTCCATCTTTTAGTACATGAAGGGACAAAAGCATTTGGGAtaaaatttgtacttttatgcAAGTGTAAACAAAAATGGGACCAAATATCTCCCTATTACGTGAAGCTAGTGTTTACATGTGATGTTTTTCTGGCTGTAGTTGAAGGGATCCGAGTTTAGTTTTCTATGCCATATTTGTTTGTACACCTCATGCTTTGCTTGGTAAGCATCATTTTACAGTCTCCTCTTGTGTAATCTTTATCTCAATGTCAAAGTGTACAAGTTTGAGCTTACTTGAGGAGCATTTCTTTCTCAGTTGaactttttatttgcattaaactgTGGTTTACACCACTGTACAAAAGCA

Function

GO:

id name namespace
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46298 lncRNA downstream 59465 25702270 ~ 25703067 (-) True G31352
TU46297 lncRNA downstream 64775 25697430 ~ 25697757 (-) True G31351
TU46281 lncRNA downstream 127384 25634948 ~ 25635148 (-) True G31335
TU46175 lncRNA downstream 298988 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 325412 25436106 ~ 25437120 (-) True G31250
TU46336 lncRNA upstream 8859 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 34119 25812640 ~ 25813615 (-) True G31385
TU46342 lncRNA upstream 35383 25813904 ~ 25815225 (-) True G31387
TU46348 lncRNA upstream 137176 25915697 ~ 25915957 (-) True G31390
XR_006250768.1 lncRNA upstream 140290 25918811 ~ 25919410 (-) True LOC122343400
XM_043236861.1 mRNA downstream 927 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043236266.1 mRNA downstream 21279 25728094 ~ 25741253 (-) False LOC122342461
XM_043236267.1 mRNA downstream 21619 25728094 ~ 25740913 (-) True LOC122342461
XM_043236862.1 mRNA downstream 66865 25686577 ~ 25695667 (-) True kcnk15
XM_043236423.1 mRNA downstream 133157 25626607 ~ 25629375 (-) True mtg2
XM_043236136.1 mRNA upstream 174239 25952760 ~ 25955621 (-) True LOC122342356
XM_043236138.1 mRNA upstream 243623 26022144 ~ 26023244 (-) True LOC122342358
XM_043236140.1 mRNA upstream 245416 26023937 ~ 26026107 (-) True LOC122342359
XM_043236143.1 mRNA upstream 911463 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 914100 26692621 ~ 26693546 (-) True LOC122342364
TU46256 other downstream 201334 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 375715 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 376158 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 377686 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 378127 25384248 ~ 25384405 (-) True LOC122343871
unassigned_transcript_476 other upstream 202945 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 206313 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 207444 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 207784 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 210089 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile