RNA id: XM_043237673.1


Basic Information

Item Value
RNA id XM_043237673.1
length 3348
RNA type mRNA
GC content 0.45
exon number 3
gene id klhl42
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9004260 ~ 9009304 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACGTCCCCCGAGCAGATCGTCGAGATCGTGATGGACGACAAAACGTACAACGTGAGTAAAAGCAAGCTGATCGAGAAGAGCGACTACTTCCGCGCGCTGTACAGCTCCGGGATGCGCGAGTCGGCGGAGGACTCGGTGCAGCTGCGGGGGCTGAGCGCGTCCGGGCTGGAGCTGGTGCTGGAGTTCATCAACACCTCCAAAGTTCAGGTGGCCAACGAGACTCTGGAGGACCTGATCGAGACCGCGTCCTTCCTGCAGGTCACGTCCATCTTAAAGCTGCTGCTGTCGGAGATCAAGCAGGAGAACTGCGTGGAGCTCTTCAAGCTCTCGGAGGTCTACGGGATGCACGACCTCAGGAAGGCTTGCTTGAAGTTCATGAGCTGCTATTATCACCCCGTGCTGCGCAGGCCGGAGTTCAGGATGCTGGCAGCTCCTCTGCGGGACCAGATCCGAGACACGCGCATGAAAGGCACGGCCGCTTTAGTCGCGATAGGGGACTTCACCGACACCTGTCTGGACCTGGCCAATCAGGACGAGCCTTGGTCTATGCTGAGGTACGACGAGCTGGAACAGCGCTGGAAACCTCTAGCCAACAATCTCCCCCAGGACATGATCAACGTCCGAGGGTACGGATCTGCTGTGCTGGACAACTACTTGTTCATTGTCGGTGGATACAGAATGACTAGTCAGGAGATCTCGGTGGCCCACTGCTACAACCCCTGCAGGAATGAGTGGAACCACGTGGCACCTTTGAACCAGAAGAGATCCAACTTCAAGCTCCTGGCCGTGAGTGGGAAGCTGTATGCAGTTGGAGGTCACTGTCTGAGCACGGTGGAGTGTTACAGTCCAGAGCAGGACTGGTGGACGTGTGTGGCGTCTCTGCCCGACCCGCTCGCTGAGTTCTCTGCCTATAGGAACACCAGCGTGCTGCGCTACTGCCCCGTCTCAGACACATGGTCCGTGTTCCGCTCCTGTTCGGCTCACGTGCGCAAGCAGCAGATGCTCTCCGTGGAGGACACCATCTATCTGGTGGGAGGTTACACGCACGAGCTAGACCCTGCAGAAATGGGCCGGCGGAGACTCGGCCAGACGGAGGACATGCTGACGGTACAGTCCTACAACGTGCAGACGGGGGAATGGTTGCAACTGAAGGAAAACACGTCAAAGTCTGGCTTGAACCTCACCTGCACGCTGCACAACGACGGCATCTACATTATGAGCAGAGACGTCAGCCTGCCCACCAGCCTGGAGCATCGCGTCTTCCTCAAGTACAACATTTTCTCAGACGCCTGGGAGGCCTTCAGACGCTTTCCTGCTCTGGGGCAGAACATGCTGCTTTGCTCTCTCTACCTACCCAGTGTCCTGTGAGCCACGCTGCTCGAGGTCTGGGGGAACGGGTTTTGTTGTAGCGAGCCTGGCCTGGTCAGAAGCGGCAGGCTTGCCAGAGGTTTATCCCAAAGCTTTACCGGATCGGATTGATCAAGCAACACAAAGAACATGCAGGatacattaaaggaataatatAGCCAAACAATTACAATTTGGTCATTATTCACTCCCCCTCAAACCGTGTGACTTTAGGAgtgactgcttttttttttttttttacgttcagCTTTGTGTTTCGCGGAAGGAAAAAGTCACATAGGTTTGAAACAACGCTTACGTACGAATGTTATTacttttttggttaaataaagGCCTTTGGATTATTAAAATCAGAAGGaaaaaagcaatagttcaccgaAAAAAGACAGTTTGCTTAAAACGTATTCACCTTCAGGCCACTCATCAGACAGAGATTCACTCgtcagtttgtttcttcatcagaacagattcagAGAAATGTATTCAGCGTTGTATCTCCTGTTTAACAGCGGATCCTTTGTGGTAAAGGGGAATGAGAgacagctaataaaaacattacaagaaTCCACAAGTAGTTCACACGCCTttagtccatcaattaacatctcaTGAAACTAAAAGCTTTGTgcttgtaataaacaaatccaccattaaaaacatttttactttaaactacAAGTCCATAATCCAAAACACTTCCTCCAGGGGATAAAGTTAATTCCATCTTGCCCTCTCacatcaaaacatatttaaacagtgcttgatctgcGCAGATTTCTCTTCCGATTCAGGCAAGATGGCTTTTTCGCTGGAAAAAGCAGTATTATAGATATAATAGATAGTCTTGATGCATTCGTTCattacaaacacagcttttgaTCACTTTACAAGATGTTggttgatggactggagtcgcatgtgatgcttttatcagtctcattctgacggcacccattcgctgcagagcaccCGTTGATGAGCAATGCAAAACCTTTCCAAGATCCCTTCTGATAAAGAAACTAAAATTCttttacatcttggatgacctgagggtgagtacattttcagcaattcctttaatttttccgtaaattatttctttaatatatccATCAGAAGttacctaaaaaaaacactacaagaGATGCACCAAACATTTTCAACCTGCGAAGAATCTTCTAATGCCAAATGCATGACCAGTACCTTAAAGATATATCACATGACATATACAGAGTTTCTTCTACTAATATACAGATGCACAAGTGAAGGCTTCAGATTCATAAAGCGGGTGAAAAGAAAACACTAAACGTACATAAGCGGATTAAATAACTTTAACAGGAAGCGTTACTTGAAGACATCAAAGTGagagttcactcaaaaatgactgaaattgagttttggccataaaatcTAAGTCAGTGGGGTCTAATGATGTTTTGGACAACACTGACTTAAGTTAAATGGacttataaaaataagaaacgtGAGCGTGAGTAAATGCTCAGTGTTCgcatttgtgggtgaactgtgcctttaagacCCAATGTGCCAGACTAAATGGTGATTGTTGAAAATGTTACAGACTATATGTGCCTGAAAAagtcgttgttttttttttttaattacactttcAGTAGCCTTAGTTGAATAATTTTGTTTCCAAATAATGTCTATCTGGAGAAGTGTCTTAACCTGTGCTGCACAAATACATAAGCGCCTGACCTAACCGCTGTGAGGCATTTTTGCATTAAGTTTGATTGAGATGACCTGTTGAGatgttattttgaaagaaaaggagattcctttttttttgttttaagtactTAATACTTGTGTTCCATTCCTTTTTATAACTTTTTGATGACTTTGAGCCGAAATGAATAACGGTTTTGTTGAGCATTCCCAAGTTGCCTTGAAAATGTAAAGAagtaagttaaataaaaatgttcaggGAAGCAAATAAAAGGCTTCATGcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40633 lncRNA downstream 596 9003923 ~ 9004223 (-) True G27417
TU40451 lncRNA downstream 43386 8960446 ~ 8961433 (-) True G27306
TU40406 lncRNA downstream 116866 8887186 ~ 8887953 (-) True G27279
TU40401 lncRNA downstream 133763 8870491 ~ 8871056 (-) False th2
TU40366 lncRNA downstream 189807 8809767 ~ 8815012 (-) False G27253
TU40644 lncRNA upstream 14573 9023877 ~ 9024077 (-) True G27425
XR_006250778.1 lncRNA upstream 320703 9330007 ~ 9341739 (-) True LOC122343442
TU40714 lncRNA upstream 489412 9498716 ~ 9504000 (-) True G27469
TU40803 lncRNA upstream 535904 9545208 ~ 9545421 (-) True G27532
XR_006250616.1 lncRNA upstream 538335 9547639 ~ 9552161 (-) True LOC122342618
XM_043237538.1 mRNA downstream 4361 8979183 ~ 9000458 (-) False nrip2
XM_043237537.1 mRNA downstream 4362 8977878 ~ 9000457 (-) True nrip2
XM_043237950.1 mRNA downstream 63416 8893950 ~ 8941403 (-) False LOC122343470
XM_043237952.1 mRNA downstream 63548 8892019 ~ 8941271 (-) True LOC122343470
XM_043237953.1 mRNA downstream 63548 8893950 ~ 8941271 (-) False LOC122343470
XM_043237137.1 mRNA upstream 9026 9018330 ~ 9023432 (-) True dram1
XM_043236750.1 mRNA upstream 32709 9042013 ~ 9048831 (-) True chpt1
XM_043236746.1 mRNA upstream 40217 9049521 ~ 9082049 (-) False mybpc1
XM_043236748.1 mRNA upstream 40217 9049521 ~ 9082049 (-) False mybpc1
XM_043236747.1 mRNA upstream 40217 9049521 ~ 9082049 (-) False mybpc1
XR_006250786.1 other downstream 63548 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other downstream 63548 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other downstream 63548 8895792 ~ 8941271 (-) False LOC122343470
TU40311 other downstream 536791 8460506 ~ 8468028 (-) True G27232
TU40263 other downstream 755594 8247911 ~ 8249225 (-) False LOC122343432
XR_006250565.1 other upstream 262668 9271972 ~ 9300179 (-) False uhrf1bp1l
TU40990 other upstream 1346407 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 1349120 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 2412765 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 2417193 11426497 ~ 11545812 (-) False ppfia2

Expression Profile