RNA id: XM_043237675.1


Basic Information

Item Value
RNA id XM_043237675.1
length 3267
RNA type mRNA
GC content 0.52
exon number 9
gene id taf3
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13102315 ~ 13144908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGGTAAAGATGGCGGCTCCTATGGAAGCGCCAACGTCCCTATTCATGTGAATTACCAAAACAAAGCCTTTCCAGGCGCCGCGAGAGCGGGCTTTCGGGAGCGGAGATATGTGTGAGAGTTACGCGCGCTCGCTGCTGCGGGTCTCCGTGGCGCAGATGTGTCAGGCGGTGGGCTGGGACGCGGTGCAGCTGAGCGCCTGTGATCTGCTCTCCGACGTGCTGGAGAGATACTTGCAGCAGCTGGCCCGGAGCTGCCACCGATACTCCGAGCTCTATGGACGCACAGACCCTGGACTGAGCGACGTGGACCAGGCTTTCGGACTTTTGGGAGTCAGTATATCTGAACTCGAGGACTATGTAAATAACATGGAGCCTGTTGGCTTGCCGCAGACTATCCCTCAGTTTCCCATCAGCAAGAGCAGCGTTCTGCAGTTTCCCGCCGCTGGCTTTGAAACGGACGCCCGTGACGCCCTTAGGGGCGAGAGGAGAGACTATATCCCGGAGTACTTCCCTCCGCTCGTCTCACTGCAGGAAGatgaggaagaggaggagccgGTTCCTGCCGATATGGGCACATCTGCCGAAGCCATGCAGGTCTCCCTGGGTGAGGAAGAGGACGTTGAGGAAGAGGAGAACGATGAAAACTGGCTTAGTCGTCATGGCGGAGAGAGTCCCAGGCCTGAGGGTCTATTACCTGCTGCCAAGAGACCCCGTCTGAGCAGCAAACCCGGCGTCAGCCCCGAATGGAGTTACGAGCCACGGGAACCTCTCAGTTCCCTCAACTCTCAACACATGCCACATTCTCCCTCCCCTCCCCTTTCCCCCGAATTACCCCGACCTCCTTTGGCACCTCCTACACCTGGCCACAAGCCAAAATTGCCATCACCCTCTCCTGCACGACAGAAGAACAAATCTCCCAAAAGAGGTGCTGGATCTGCACCCACTGGTGTATTGGGGCGACCACTTATGTTGACCCCACCCAAGACCAATCAGAAGGCAGGAAAAAGGTCACCCGGTAGGCCCAAAAGCCCCCGCAGCCCAAGGCCAAACCCTGTCCTTTTGGGTGCAGCTGGACGTGGTTGGCCTGGACCACCTGCAGATGATTGTTCTCGTGATGGCCTGTTCAGAGGACAGGATACAGGAGAAGAGGATATTGAGAACTCTATTGCTGCTGTGATTGCACGGGCTTGTGCGGATGGAGATGGCACATCAGACCCCTTTGCTTACGACTCAGACTCAGACAGTGAGGGACCAAACCCTCCGAAACCTGCACCCAAACATATAATAAGCCACATCAAACCTCCACAAGCTCTTACCATAAAACACCCCCTTCCACCACTTCCCCCAAATCTTAACCCACCCAATCGCTGGACGATGGATGACTCTATAGACGAGGTCATCCGAAAGGCCAATCAGGCTCAAAAGCCAATTCAGGCCCCAAGTCTTTCCCCTCCAGAACCCACTTACCTGTCGTCCCCACCTGACTCACCTCCCACACCGCCTCCACCCCTAAAACCTCCCCAGGAACGGAAAGACCCTACTACCACTACCCTTCTGAAGAAAAAACTCAAGAAGGACATCAGGGTCAAGTTGAAGAAGAAAGACAAGGAGCGACTCAAGGAGAAGggcaaagagaaaggaaagaatAAGGACAAGAGCAAGGAAAAGAAGCGGGAAAAGGAGCGAGGGCAGGTAGAGGAGAACAAGATGCCCTGGCCAGAGCTATTGCTAGGAGGTGAGGAGCGCAGAGACGGCATTAGCGGGAAGAAAGAGAAGGACAAGCACAAGGACAAGAAGAAAGATAAAGAGAAAagcaagaaagagaaagagaaacgaGACAAGGGCAAGGAGCGAGGCAAGGAAGAGAAGAGGATATCTCAAGGAACCAAAGACATCGCCGCTGCTGTCTGCGCCACCAGCCCACTCTTTAGCCCCCAGACCTGCCTACGAGTCCCATCTATGCTGCCCCCATTGCCACCAATACTCCCTGATAAATTATTCCCACACCCCAAGGATACCAAGGGCAAAGACAAGGACAAGAAGAAGgacaagaaagagaagaagaagaaaaaagaaaaggagaaagacagagagaaggaACGGGAAAAGGAAAGGGAGAAGGAACGTGCGAGGGAGAAGGAGCGAGAtaaagaggagaagaagaaagacaaagagaagaaagaaaagacaaagGAAAAGGAGAAAGACAAGCCAAAACTTGAAAAATCAAGTTTATTGGCTGATATTCTTCCCGCTGTCCCACCGTCTCCCGTCATACCCCGACTGACCCTCAGAGTGGGCGCCGGACAAGACAAGATTGTGATCAGTAAGGTGGTCCCGGATTCGGAGCCCACCCCTCCACCCCCACGGACTCCGGTGGCCAGGCCCAGTCCAGCGGCGCGGATGCGCCCTCCCGCCCCACCCCCCCCGCCCGGCTCCGTCGCACCTCCACCCCGCCTCCGCCCGTCCTGCCCCTCCACCCCCAGCCGCCCCATCCAGCCTCCGCCCAGCCAGGCCAAAGCACGGGGATGCAGCGTCGTCACAGAGACCGTCAGTGCATACGTGATTCGGGATGAGTGGGGGAATCAGATCTGGATTTGTCCAGGATGTAATAAACCTGATGACGGCAGTCCCATGATCGGATGCGACGAGTGTGACGACTGGTATCACTGGCCCTGCGTGGGTCTCGTAGCCGCCCCTCCGGAGGACCAGTCGTGGTACTGTGTGAAATGCGCTGGCaagaagaaagacaagaagacaaaaaaaaggaaatgcaaagCGCACTGACccacatttctttttctctcgtCTCCGTCTTCATCTGTTTTCGCCTTAATTCatttccaacttttttttttttttctcatttgttctttttttttttttttttttttttccctcacccAGCCCTTCTTTTTAACTTGGTTAACTTAACTCAGTGTCCGGTatcataatgtattttttaaaaatgaaaatttcaaatgtgtatatgttacttttttatgtgGAGAATCGTATAGTATGTCTATATGATCTTTGTATGGAGCTCATGATTGTTCGGTAGATGTGTTGAAATGGACCTCTCGGTTTGCCCTCATTAAAGCTTGTTTCATGTATGTGCTGATTCATCAAATCTACTTCGCCCATGAGAAAAAGCATTCTGTACTATAATCTGCCTTTTAATATCATTCTTCTGATTGATTTCGACTGGAGGTGCAGTTTCATTTTACTGtggatttaattaaaagttgctTTTTCACATctta

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14650 TAF3; transcription initiation factor TFIID subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250594.1 lncRNA downstream 30795 12988707 ~ 13071520 (-) True LOC122342546
XR_006250593.1 lncRNA downstream 30795 13022123 ~ 13071520 (-) False LOC122342546
TU41980 lncRNA downstream 31162 12988876 ~ 13071153 (-) False LOC122342546
TU41701 lncRNA downstream 833575 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 864178 12236645 ~ 12238137 (-) True LOC122342788
TU42001 lncRNA upstream 32053 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 82792 13227700 ~ 13227947 (-) True G28349
TU42028 lncRNA upstream 84186 13229094 ~ 13229319 (-) True G28350
TU42033 lncRNA upstream 97598 13242506 ~ 13245388 (-) True G28353
TU42039 lncRNA upstream 105743 13250651 ~ 13252034 (-) True G28359
XM_043236658.1 mRNA downstream 11480 13075216 ~ 13090835 (-) False gata3
XM_043236663.1 mRNA downstream 16751 13076300 ~ 13085564 (-) False gata3
XM_043236661.1 mRNA downstream 16755 13075216 ~ 13085560 (-) False gata3
XM_043236662.1 mRNA downstream 16756 13075216 ~ 13085559 (-) False gata3
XM_043236659.1 mRNA downstream 16758 13075216 ~ 13085557 (-) True gata3
XM_043236346.1 mRNA upstream 1746 13146654 ~ 13150706 (-) False atp5f1c
XM_043236345.1 mRNA upstream 1746 13146654 ~ 13150706 (-) True atp5f1c
XM_043236347.1 mRNA upstream 3042 13147950 ~ 13150706 (-) False atp5f1c
XM_043236342.1 mRNA upstream 7513 13152421 ~ 13164123 (-) False itih2
XM_043236341.1 mRNA upstream 9238 13154146 ~ 13164123 (-) True itih2
TU41785 other downstream 613159 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 613159 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1086548 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1556503 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1678232 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 172024 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 172024 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 179617 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 266716 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 548037 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile