RNA id: XM_043237678.1


Basic Information

Item Value
RNA id XM_043237678.1
length 1990
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC122343294
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4889423 ~ 4894735 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTCGGCAGGTATATGCGGGTGTTACTGCCGGAGAGGTTGATGATGCATCTTTCCAAAGGGAGTATTAACATCTATACAGAGACTGAAGTTGGATTTTAGGACATTCGTGATAGATACCGATTGGGTTTATAGTTTAAAAACCCGCCGGAGTTATTTTATCAGCTCTCTGCGAGACTGATTTGCATAAATCGCTGAAAGCTTTTTGGCACAACATACGGGAATTCTTGCGGGGGGAAGTACGGCATAACTAAAAAGTGTCCACCTGGATGGGACGCGATGGGAAAAGGGTCGACGTGACGGAGCATCGTGTTTGATTACCTCACTTCATCATCCGATGTTATATGCCTACTATTCAGGAAATAAGTAGACTTTTTAAACAGGATGGCATTAAAGCGCTCGTCTTCCATGAAGACCCAGCTGGTCAATGCCATCCAGCTTCAGGAAgtggagctggaggaggagatCAACACAAGTAGCAGTAATAGCACACATGCCGAAGCTGCTGAGGCCAAAGAACCAAAATGCTACACCGTGGAGGAGGCTGTGGAGAGCATTGGCTTCGGACGCTTCCACATATTGCTTTTTGTCATCATGGGTAGTGCCAATATAGTGGAGGCAATGGAGATCATGTTGTTGGCTGTGGTTTCTCCTGAGATCCGCTGCGAATGGCGTCTAGAGGATTGGCAGGTGGCCCTTGTCTCCACGATGGTGTTCCTCGGTTTCATGGTCTGTGGCGTCCTCTGTGGTTATGTTGCCGACAAATATGGACGTTGGAAGGTGGTGTTTGGAGGCTTTATATGGGCATCGTATTTTTCTCTGCTCACTTCATTCTCTCCATCGTATGGATGGTTCATCTTCCTGCGCTGTATGGTGGGCTGTGGTGTTGCAGCAACATCTCAAGGGTTTGTTTTGAAGACTGAATTCATCCCAGCCAAATACAGAGCTTTTCTGCTGCCTCTTGCCGCGGTCTTCTGGATGCTGGGTTCtatgcttattattattctcGGTATGACAGTGGTGCCTACAATGGGTTGGCGCTGGATGATCCGTTTTTCTATAATCCCCAGCATCATTCTCATTGGACTCTTCATGttTATTCCCGAGTCTGCACGGTTCCAGGTCTCAGCAGGCAATGTACAAGGAGCCATGTCAACACTTAACTGGATCGCGAGGATGAATGGCGCCTCCTTACCTGAAGGAGAACTACGGGAACCTGAAGTGTTAGAAAGAGGAAATGCCATCACTCTGATCAGCCCAGCTTTTAGAAGAACATCACTTTTGCTGTGGTACTCCTGGTTTGTGGCCTCCTTCTCCTATTATGGCTCGGTTCTGAGCGGCTCTGAGTTGCTGGAGAAGAATCTTCTATGTATGACGGACGCTGATCCAGAGCACCAGATCAAACACAACCAGGAGGAGGCGCTGTGTTACTGTATCCCGTTCAACATGGCTGATTACCAGACTCTcctcatcagctgtttgggcgAGGTGGCACTTATACCCCTTAATATTGGCCTGTTAAATATATTTGGACGGAAGCCCAGTTTGGCCATACTTCAGGTGTTGTCAGCCTTTTTCTTCATGATTGTTAATATTTGCACAACAATGATGGGTTTCACTATACTGCTCTTCCTTCTCCGCTCCGTGGTTTCTATGAATTTTAATGTCGTCTACATTTACACAGCAGAGGTTTATCCCACGGCCGTACGCTCAATTGGAATGGGCTTTTGCACATCCTTCAGTCGAGTCGGAGGAATGATCGCACCATTTATTGCACAGGTGTTAATGTCTAAGTCTGTGATTCTGGCCCTGTCGCCGTTTGCCTTGGCGTGTGTGATTTGTGCGGTGGGAGTGTTGTTTTTGCCCATTGAGACCAGAGGACGTGCGTTACTACAAGACGCCTGAAATACAATGGAGAAATGAAGAGCAATTGCACTTTTGTAACAAAACATCTCATATTAAAGCTGGAAggattttctattatttttaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38607 lncRNA upstream 121602 4765864 ~ 4767821 (+) True G26008
TU38569 lncRNA upstream 145820 4730837 ~ 4743603 (+) True G25976
TU38575 lncRNA upstream 198640 4689375 ~ 4690783 (+) True G25981
TU38522 lncRNA upstream 453786 4432605 ~ 4435637 (+) True G25941
TU38521 lncRNA upstream 457465 4431623 ~ 4431958 (+) True G25940
TU38673 lncRNA downstream 86474 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 86474 4981209 ~ 4991489 (+) True G26043
XR_006250776.1 lncRNA downstream 88486 4983221 ~ 4985211 (+) True LOC122343429
XR_006250590.1 lncRNA downstream 91444 4986179 ~ 4988188 (+) True LOC122342533
XR_006250591.1 lncRNA downstream 94432 4989167 ~ 4991312 (+) True LOC122342534
XM_043237910.1 mRNA upstream 810 4868022 ~ 4888613 (+) True si:dkeyp-27e10.3
XM_043237911.1 mRNA upstream 810 4868022 ~ 4888613 (+) False si:dkeyp-27e10.3
XM_043236548.1 mRNA upstream 22241 4861328 ~ 4867182 (+) True parp12b
XM_043236546.1 mRNA upstream 28275 4854065 ~ 4861148 (+) True ttc41
XM_043236550.1 mRNA upstream 41679 4843284 ~ 4847744 (+) False glt8d2
XM_043237676.1 mRNA downstream 147 4894882 ~ 4928702 (+) True LOC122343293
XM_043237834.1 mRNA downstream 41210 4935945 ~ 4944880 (+) True LOC122343397
XM_043237820.1 mRNA downstream 63941 4958676 ~ 4965197 (+) False dmtf1
XM_043237821.1 mRNA downstream 64146 4958881 ~ 4965197 (+) True dmtf1
XM_043236024.1 mRNA downstream 159055 5053790 ~ 5068865 (+) True syt10
TU38543 other upstream 260524 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 260524 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 654179 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 658331 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 1150829 3737502 ~ 3738594 (+) True G25551
TU38659 other downstream 34736 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 41194 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 459597 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 504145 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 887209 5781944 ~ 5853381 (+) False LOC122342465

Expression Profile