RNA id: XM_043237686.1


Basic Information

Item Value
RNA id XM_043237686.1
length 4431
RNA type mRNA
GC content 0.52
exon number 21
gene id atp1a3a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27622672 ~ 27649545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGGCTCTTCATCTCGCCGGCATCATTCTGAGCCAGAGACGCTTCATAATCCTCTGCGCTGCATATGCTCTTCTATCATTATATCAAAGGCTGCCACATGTGCTTTTAGAAACCCATGCAGCTTGGGCCATTCTTTAAGTTTTTCCTTCATGCAGACCCCCTGTAATACATTACTATGCATGGTATCTTCAAGAatatatagatttaatttataGACAGAGGGTCGTTCAAACGCCGCCCGTCGTTATCCGTTCAAGAGcctattttttcttctctcccGCTTGACTGAAACCAAACGCAGTTTGACTGACTGAAGACACAGCGACTGACGGCTCCAAAATGGGGTATGGACGGTCGGACAGCTACCGCGTGGCAACCACGCAGGACAAAGATGAGAAGGAGTCTCCTAAAAAGGGAAAGGGAGGGAAAGACCTGGATGACCTGAAGAAGGAAGTACCGCTGacaGAGCATAAGATGTCAATTGAAGAAGTATGCCGAAAATACAACACTGACATCGTACAGGGTCTGACTAATGCCAGGGCGGCGGAGTACCTCGCTCGGGACGGTCCCAACGCTCTCACCCCACCCCCCACCACCCCGGAGTGGGTCAAATTCTGCCGACAGCTCTTCGGAGGATTCTCCATCCTGCTGTGGATcggagccatcctctgcttccTGGCCTACGCCATCCAGGCCGCCACGGAGGACGAACCCGCCGGAGACAATTTGTATCTGGGGATCGTGCTGTCCGCTGTGGTCATCATCACCGGGTGCTTCTCCTACTTCCAGGAGGCCAAGAGCTCGAAGATCATGGAGTCTTTCAAGAACATGGTTCCCCAGCAAGCTTTAGTGATCCGTGAAGGTGAGAAGCTCCAGATTAACGCTGAGGAGGTGGTGGCTGGTGATCTGGTGGAGGTGAAGGGAGGAGACAGGATCCCTGCTGACCTCAGGATCATTTCTGCTCACGGCTGCAAGGTTGATAACTCCTCCCTGACGGGCGAATCAGAGCCTCAGACTAGGTCACCTGACTGCACCCATGACAACCCTCTGGAAACCCGTAACATCGCCTTCTTCTCCACCAACTGCGTTGAGGGTACAGCTCGAGGGATTGTGGTGTGCACCGGTGACCGCACCGTCATGGGCCGCATCGCCACTCTGACCTCCGGCCTGGAGACCGGGAAGACCCCCATCGCCAAGGAGATCGAGCACTTCATCCACATCATCACGGGTGTGGCCGTCTTCCTGGGCGTCACCTTCTTCATCCTGTCAATCATCCTGGGCTACAGCTGGCTGGAGGCCGTCATCTTCCTCATCGGCATCATCGTCGCCAACGTGCCCGAGGGACTGCTGGCCACCGTCACTgtgtGTCTGACGCTCACGGCCAAGCGCATGGCCCGTAAGAACTGCCTGGTGAAGAACCTGGAGGCTGTGGAGACGCTGGGGTCCACCTCCACCATCTGCTCTGATAAAACCGGCACCCTGACGCAGAACCGCATGACTGTCGCTCACATGTGGTTCGACAATCAGATCCATGAGGCAGACACCACCGAAGATCAGTCTGGTGCATCCTTTGACAAGAGCTCTGGGACGTGGCTGGCTCTGGCCCGTGTGGCGGCGCTCTGTAACAGAGCCGTGTTTAAGGCGGGACAGGAGTCTCTACCCATCCTGAAGCGTGATGTCGCGGGTGACGCCTCTGAATCGGCTCTGCTCAAGTGCATCGAGCTCTCCTGTGGATCCGTCAAAGCCATGAGGGACAAGAACAAGAAAGTGGCTGAAATTCCATTCAACTCCACCAACAAATACCAGCTCTCAGTGCACGAGACAGAGGAGGGAACCGACAGCCACtacctgctggtgatgaaggggGCGCCAGAGCGCATCCTGGACCGCTGCTCCACCATCCTGCTGCAGGGCAAAGAGCAGCCCATGGACGAGGAAATGAAGGAGGCCTTCCAGAACGCCTACCTGGAGCTCGGAGGACTCGGAGAAAGAGTGCTGGGTTTCTGCCACTTGTTCCTGCCCGAGGACAAGTACCCCAAAGGATTCGCCTTCGACACAGACGACATTAACTTCCAGACGGACAACCTGTGCTTCGTGGGCCTGATGTCCATGATTGACCCGCCCCGAGCTGCCGTCCCGGACGCCGTGGGCAAATGCCGCTCAGCTGGAATCAAAGTCATCATGGTGACCGGTGACCATCCCATCACGGCCAAGGCCATCGCTAAAGGTGTGGGGATCATCTCTGAGGGTAACGAGACCGTGGAGGACATCGCCGCTCGACTAAACATTCCCGTCAGCCAGGTCAACCCCAGGGATGCCAAAGCCTGTGTGATCCACGGCTCAGATCTGAAGGATCTCACACAGGAGCAGATGGATGAAGTGCTGAAGAATCACACAGAGATTGTGTTCGCCAGGACCTCTCCACAACAGAAACTCATAATCGTGGAGGGCTGCCAGAGACAGGGCGCCATCGTTGCTGTGACTGGCGATGGAGTGAACGACTCGCCCGCTCTGAAGAAGGCAGACATCGGCGTTGCTATGGGGATCTCTGGATCAGACGTCTCCAAGCAGGCAGCAGACATGATCCTGCTGGACGACAACTTTGCATCCATCGTTACTGGAGTTGAGGAAGGTCGTCTGATCTTTGATAACCTGAAGAAGTCCATCGCTTACACACTGACCAGCAACATCCCTGAGATCACACCCTTCCTGTTCTTCATCATGGTCAACATTCCTCTTCCTCTCGGAACCATCACCATCCTCTGCATCGACCTGGGCACTGACATGGTCCCTGCAATCTCATTGGCTTATGAAGCAGCAGAGAGTGACATCATGAAGCGCCAGCCTCGTAACCCTCACAGGGACAAGCTGGTGAACGAGCGTCTCATCAGCATCGCCTACGGACAGATCGGTATGATTCAAGCCCTGGGAGGGTTTTTTAGTTATTTCGTGATTCTGGCTGAGAACGGCTGGCTTCCCAGTCTTCTGGTGGGCATCCGGCTAAACTGGGACGATCGCTCCAACAATGACCTGGAGGACAGCTACGGACAGCAATGgACGTACGAGCAGAGGAAGATCGTGGAGTTCACCTGTCACACGGCCTTCTTCGTCAGTATCGTGGTGGTGCAGTGGGCCGACGTCATCATCTGCAAGACTCGACGCAACTCTGTGTTCCAGCAGGGCATGAAGAATAAAATCCTGATCTTTGGCCTGTTTGAGGAGACGGCTCTCGCTGCCTTCCTGTCTTACTGCCCCGGCATGGACGTGGCCCTCAGGATGTATCCTCTCAAGCCCAGTTGGTGGTTCTGTGCGTTCCCTTACAGcttcttaatttttgtttatgatGAGATCCGAAAACTTATCCTGCGCCGAAACCCAGGAGGTTGGGTTGAAAAGGAGACATACTACTGAATTGTCAAATACTTCACTCATCGATTCTCCCTCATTCCCTCACTATCTCTttcttcatctttctctctctctctctctctctctctctctttttcacattCCAACCATTCCTCCAAAACCGAAACAACCACGTCACTCCTTCCTTTTACCGAAATAACAAGCAAGAAGATGAGAAGCCCGACCACAGAGGAAGACGACAAAGctcctttgtttttgttttgttccgtTTCTGCCCAAAGACTACAGCTGAATCTGCCAGTATGATAGTAGTAAGGTTTACCACGCTGTAATGGATGTCACCCAGCAGCTGCGTTCAGACTCAATCACGGTCGACAGGGACTCCTGTACAAACACTGCCACGCTAGATTACTGTTATCTTTACCCTCCAAAAATACTAATAACCTGAAGATCATAACTCATTTAGACCCTCGCCCTCTGCTGGGGAAAAAGAGGAGCACAGCTTTCCTCACCCCTATCCGGCacctgtctgtctttctttctttttttttcaatgtgctTCTTGTTTTTCgagtgttgtttttattaatcattcataacttttttgttcgatttttttttttttttacgttagaAGTGTGTCTGAGAGCTGCTTGGTTTCATTTTTCTCGGACATGACAAAGCACACTGCCACcctttcactctttctctctctctctctctctctctctctctttctctcgctcctCCTTTCCTTCCCCTTTTATCCTGCACTCCCCCCTCCCTCCCAGCTCTTGCTCCTtctgtccgtctctctgtcCCCGTCTGTTTGTCTGTTCGTGAACGATGTGAAGAAGCCGCCCTCCTCTATCCGCCCCCGTTTCCCCTCTTTCCCcgttaaaaaagagaaaatacaatCTTTCTGTGTCCTAGGAAAAAGAGACTTCTCTCTGATTTCATTGTTTAAATAAgtgcagaaaaaaatggaataaaagcAATGTACCAATACGtgaaacaacagcaaaaaatgaaataaaaaagaaggaTCTCTCTTTTCTCA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0021591 ventricular system development biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0007626 locomotory behavior biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250747.1 lncRNA upstream 3011 27607787 ~ 27619661 (+) True LOC122343300
XR_006250749.1 lncRNA upstream 5814 27607787 ~ 27616858 (+) False LOC122343300
XR_006250748.1 lncRNA upstream 5814 27607787 ~ 27616858 (+) False LOC122343300
XR_006250746.1 lncRNA upstream 5814 27607787 ~ 27616858 (+) False LOC122343300
TU46445 lncRNA upstream 5845 27607787 ~ 27616827 (+) False LOC122343300
TU46532 lncRNA downstream 62701 27712246 ~ 27713190 (+) True G31520
TU46558 lncRNA downstream 148428 27797973 ~ 27798209 (+) True G31540
TU46561 lncRNA downstream 173861 27823406 ~ 27823705 (+) True G31543
TU46576 lncRNA downstream 262772 27912317 ~ 27951998 (+) True G31549
TU46577 lncRNA downstream 262772 27912317 ~ 27951998 (+) False G31549
XM_043237688.1 mRNA upstream 23414 27460515 ~ 27599258 (+) True pvrl2l
XM_043237687.1 mRNA upstream 79429 27460481 ~ 27543243 (+) False pvrl2l
XM_043237111.1 mRNA upstream 180472 27436433 ~ 27442200 (+) True tcf19l
XM_043237110.1 mRNA upstream 186644 27419543 ~ 27436028 (+) True LOC122342913
XM_043236923.1 mRNA upstream 216584 27390339 ~ 27406088 (+) False LOC122342806
XM_043236227.1 mRNA downstream 15560 27665105 ~ 27711406 (+) True LOC122342440
XM_043236229.1 mRNA downstream 15560 27665105 ~ 27711406 (+) False LOC122342440
XM_043236228.1 mRNA downstream 15560 27665105 ~ 27711406 (+) False LOC122342440
XM_043236230.1 mRNA downstream 15560 27665105 ~ 27711406 (+) False LOC122342440
XM_043236231.1 mRNA downstream 15560 27665105 ~ 27709193 (+) False LOC122342440
TU46402 other upstream 254682 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 254682 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 264525 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 398686 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 481048 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 557413 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 569188 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 635482 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 635482 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 650482 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile