RNA id: XM_043237696.1


Basic Information

Item Value
RNA id XM_043237696.1
length 1011
RNA type mRNA
GC content 0.51
exon number 5
gene id opn1sw1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6756012 ~ 6758188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATGCGTGGGCCTATCAATTTGGAAACCTCTCCAAAGTCAGCCCCTTCGAGGGCCCGCAGTACCATCTGGCCCCCAAGTGGGCTTTCTACCTCCAGGCAGCTTTCATGGGCTTTGTATTTCTGGTGGGCACACCTATGAACGCCATCGTCCTCTTCGTTACACTGAAGTACAAGAAACTCAGACAGCCTCTCAACTACATCCTGGTGAACATCTCCCTAGGAGGCTTCATTTTCGACACGTTCTCTGTAAGCCAAGTGTTCTTGTCCGCTCTTAGAGGTTATTTCTTCTTCGGTCATATGATGTGCGCGATGGAATCGGCAATGGGATCGATTGCAGGACTTGTGACAGGATGGTCCCTGGCGGTTCTGGCTTTCGAGAGATACGTGGTTATCTGCAAACCCTTTGGAAGCTTCAAGTTCGGACAAAGCCAGGCCATGGGAGCCGTTGCGCTCACCTGGATCATAGGTATCGGTTGTGCCACGCCACCGTTCTGGGGATGGAGCAGATACATTCCAGAGGGTCTCGGCACCTCCTGTGGACCTGACTGGTACACGAAAAGTGAGGAGTACAACTCGGAGAGCTACACTTACTTCCTAATGGTCACCTGCTTCATTCTGCCAATGATAATCATCATCTTCTCCTATTCACAACTTCTGGGAGCCCTGCGTGCTGTTGCAGCCCAGCAGGCCGAGTCTGCCTCCACCCAAAAGGCTGAGAAGGAAGTGTCCAGGATGGTTGTAGTGATGGTTGGCTCTTTTATAGTTTGCTATGGCCCTTACGCCCTCGCTGCCTTGTATTATGGCTATGCTGAGGATTCAAACAAGGATTACCGTCTGGTTGCCATCCCTGCTTTGTTCTCAAAGAGCTCCTGCGTGTACAACCCCCTAATCTACGCCTTCATGAACAAACAGTTCAATGCCTGCATCATGGAGACCGTATTTGGCAAAAAGATTGATGAGGGCTCGGAGGTTTCCAGCAAAACCGAAACCTCCTCCGTGTCCGCATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04252 OPN1SW; short wavelength-sensitive opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250660.1 lncRNA downstream 366811 6377116 ~ 6389201 (-) True LOC122342911
TU39386 lncRNA downstream 488598 6266832 ~ 6267414 (-) True G26556
TU39377 lncRNA downstream 503364 6207174 ~ 6252648 (-) False arhgef39
TU39371 lncRNA downstream 521074 6186089 ~ 6234938 (-) True G26541
TU39723 lncRNA upstream 83786 6841974 ~ 6843849 (-) True G26787
TU39728 lncRNA upstream 87371 6845559 ~ 6908495 (-) True G26790
TU39733 lncRNA upstream 101886 6860074 ~ 6862247 (-) True G26795
TU39736 lncRNA upstream 104535 6862723 ~ 6863382 (-) True G26796
TU39740 lncRNA upstream 125713 6883901 ~ 6956375 (-) True G26799
XM_043237514.1 mRNA downstream 5762 6740893 ~ 6750250 (-) False mdm1
XM_043237512.1 mRNA downstream 5763 6740893 ~ 6750249 (-) True mdm1
XM_043237515.1 mRNA downstream 6444 6740893 ~ 6749568 (-) False mdm1
XM_043237595.1 mRNA downstream 15271 6737641 ~ 6740741 (-) True il22
XM_043237771.1 mRNA downstream 21283 6732341 ~ 6734729 (-) True il26
XM_043236394.1 mRNA upstream 18111 6776299 ~ 6784035 (-) True irf5
XM_043237094.1 mRNA upstream 34179 6792367 ~ 6793435 (-) True akap14
XM_043236564.1 mRNA upstream 175905 6934093 ~ 6940296 (-) False gxylt1b
XM_043236563.1 mRNA upstream 175905 6934093 ~ 6940296 (-) True gxylt1b
XM_043236565.1 mRNA upstream 176398 6934586 ~ 6940296 (-) False gxylt1b
TU39663 other downstream 16417 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 394569 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 816013 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 842474 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 902646 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 796927 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1489723 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1702318 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 2135996 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 2137604 8895792 ~ 8941271 (-) False LOC122343470