RNA id: XM_043237706.1


Basic Information

Item Value
RNA id XM_043237706.1
length 1320
RNA type mRNA
GC content 0.45
exon number 3
gene id rd3l
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17033921 ~ 17037157 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAGAGAGACAGAAGGCAGTTTGCGGTGGACAGGGGAGAATTTCACATTCTTCATCTCAACTTTGCCCGTCGCAGTCACATAGCTGTGTGTCACTGGCACACGCTCTCTTATTTTTTTGATTGTCATTCTTCCTGTTCAAACACTTAGCTTCTCTTACTGTCTTTCTGCAGCCTATCTCTTCTCATCTTTcccacttttatttttacccttTCATTCTATATCAGACGTCCGgcttcatttacatattttatttgccTAACCTAATGAAATTTGGTGGTACCAGATGGACTCAAAGCATCACGGACCTCGACCTCTAAAACCCACAagTCCGGCCATGCCTTTCGTAAGTTGGCCCCACACAAATGGATGTGGAGGCCCGGGTCGGATGCTGCTACGCGAGATGATTTGGCAGCTGGAGCAAAGAGTACTTCAAATTCAAGAGGAGGAGTTTCAGTACTGTATCTCCCGTGGCATTTTGGGATACCGTCACCCCCCAGCATACCCAAGCCTGCTTGCCCTCATACCCGCCTCCGAACACCGCCAGCTAGAGCGGCTCTGTGGCCGCATCCCACCCTCACACACCGCCGTCGTACTGTCCAGACTCCATGATCTCATGGCCCACAATGACATCCCTCCCTGGGAACTGGTGGGTGTCTTCAAGCAAGTTCTTAGAGACTTCCTGAGGAGACAGGAAGACGGCATGCAAAGACGTCCAGCCCCTTCAGCTCCACCAACAATTCTTTCTGCTTCCAGTCCACCTACAGAGAGTAATGACAGAAATCACATAGCTGGAAATGCATCTAGTTCTTTATCAGAGGAGTCAGGGAAGCACAGGGAGGAAATCCCCACGATTTCTAGTTATGTGGATAAACATTTGCGTGCCTCCTGCCCTTACTCTATCCACAGAGATTGGAGTCTGCCCTTCTGCCATCCTTTTGCTTACGAGGCCTACAGCACCACATTGTGAGACACTTAATTGTAAAAGTCCAACATGTTCTCAAAGCAATTCCtaacagttttatgttttagcaAATTGGTGGCTAATTTGTTGTCTCGTTTctcatttatatgtttttgtatgatCCGCTTGCATCCAGCTGATTGTTAGTATCATGCattaaaatcatgcattttcATACAAATCTCACCCTACAAATGCTTATGAAATCTCCACCTCTTAAATAATTGTTTCCTCATGAGAAAAGTCCATGCAGctatttttctgtgtgtttcctGTTTAGACTGATTAAAAGTCATGATCTATGTGATGTTAAAATTTGGAAGATGAGCCATAATCTTTTAATAATCAATCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43090 lncRNA upstream 92611 16941016 ~ 16941310 (+) True G29078
XR_006250658.1 lncRNA upstream 122579 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA upstream 122579 16897515 ~ 16911342 (+) False LOC122342883
TU43024 lncRNA upstream 281332 16748718 ~ 16752589 (+) True G29026
XR_006250728.1 lncRNA upstream 333703 16698521 ~ 16700218 (+) True LOC122343214
TU43099 lncRNA downstream 116 17037273 ~ 17038220 (+) True G29086
TU43100 lncRNA downstream 1297 17038454 ~ 17040830 (+) True atp5mj
TU43101 lncRNA downstream 1297 17038454 ~ 17040772 (+) False atp5mj
TU43107 lncRNA downstream 9714 17046871 ~ 17085857 (+) False G29089
TU43104 lncRNA downstream 28120 17065277 ~ 17085857 (+) True G29089
XM_043237785.1 mRNA upstream 7583 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA upstream 7583 17016609 ~ 17026338 (+) False rtn1b
XM_043236321.1 mRNA upstream 94234 16937799 ~ 16939687 (+) True six1b
XM_043237031.1 mRNA upstream 101715 16925017 ~ 16932206 (+) True six4b
XM_043237784.1 mRNA upstream 195497 16822113 ~ 16838424 (+) True rhoj
XM_043236560.1 mRNA downstream 1262 17038419 ~ 17040714 (+) False atp5mj
XM_043236555.1 mRNA downstream 3700 17040857 ~ 17083120 (+) False ppp1r13bb
XM_043236554.1 mRNA downstream 4193 17041350 ~ 17083120 (+) True ppp1r13bb
XM_043236553.1 mRNA downstream 4193 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236556.1 mRNA downstream 4193 17041350 ~ 17083120 (+) False ppp1r13bb
TU42966 other upstream 559540 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1048195 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1192066 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1378740 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1478239 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1263258 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1399303 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1846022 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2253063 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2694105 19731262 ~ 19786128 (+) False G29835

Expression Profile