RNA id: XM_043237708.1


Basic Information

Item Value
RNA id XM_043237708.1
length 2866
RNA type mRNA
GC content 0.47
exon number 11
gene id waslb
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1257733 ~ 1272088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCGTCTCACTGTCATGCGCAGCGGCGGCACTGCCATGTTGGATCGAAAGCTCGGTGCTCAGGAGTTCAGATGAAAGTTTAGAGTCTCAAGACGACGTTGGACACGCAAAAGAGGATCGCGTTTTATTTCTGGGACGCAAGACCTCTCTCAAACCAGCCCCGGCCGAAACACACAGGTCTGATTATGAGAGCCTCCGGATCCGAGCTGCGGTGATCAGAGATCAATGAACGcatattttctgtttaacaCTTCCTGATCACAAGTTCACGCCAACGGATTGTCAAAAATGAGCGGTCCACCTTCGAACAGGAGGCCTACGAGCAATGTCGGCTCCATTCTTCTCACCCAGCAAGAAAACGAAGTGCTCTTCAACCATCTGGGCAGGAAATGCACCAGTTTGAGCTCAGCGGTGGTGCAGGTCTATGGAGCTGACAGGAACTCGTCCTGGGTGAAGAAGTGCTGCGGGGTGGCCTGTCTGGTGAAAGACAATCCTCAGAGATCTTACTTTATCAGGGTGTTCGATATGAAAGATGGAAGACAGTTGTTTAATCAAGAGCTCTACAACAACTTTTCAGTGAACTGCTCCAGGCCATACTTCATCACATTTCCTGGAGATaCGTGCCAGATCGGTCTGAACTTTGCCAGCGAGGAGGAAGCCAGGCGCTTCAGGTCTGCAGCCAATGAACTTCAGAATAGAAGAGGGAGGAAAACGGAAAAAAGACGTGACCCACCTAATGGACCCTCAGGACCTTCGGGACCAACACTTCCAATGGCGACGGTGGACATCAAGAACCCCGAAATCAACAACCAGCGTTATCAAAACAACACTCAAATGAACAACATTAATCTCCACAGCAACTTCAacagaaaagacaaaagcaaaggcaagaacaagaagaagaaaatatccAAAGCTGAGATCGGCACCCCGAGCAATTTCCGgCATGTAGGCCATGTCGGCTGGGATCCCAACACAGGCTTTGACTTGAATAATCTGGACCCGGAGCTCAAGAACCTGTTTGACATGTGTGGCATTTCCGAGGCCCAGCTCAAAGACAAAGAGACGTCTAAAGACATCTACGAATTCATTGAGCAGAGAGGAGGAGTAGAGGCCGTCAAAAATGAGTTACGAAGACAAGcacctccacctccaccatCCAGAGGAGggcctcctcctccacctcctcatAACTCTGGTCCTCCTCCCCCACCTCCCTCCAGAGGCCGAGGAGCACCGCCTCCACCGCCTCCATCCAGAGTGCCCACCTccgctcctcctccacctcctccccCCTCCCGACCAGGTATGGGCGCACCTCCACCTCCTCCCCCCAGCAGAGGTCCCGGGGcggctcctcctccacctcctccaccccAGCCTGCCTCCCTGTCTCCTCTggctcctccacctcctcttcCTTCTTCAGTGGGCGGAGCACCTCCTCCACCGCCGCCGCCGCCTCCAGGACCCCCTCCTCCCGCACCTCCTCCTCTACCGGACGGGGATTTAGGAGAAGCACCGGGGGGTAAATCTGCACTCCTGAACCAAATTCGAGAAGGAGCACAGCTGAAGAAAGTGGACCAAAACAACAAGCCGCCCGTGTCCGGAGGCGGCCGTGACGCACTCTTAGACCAAATACGACAGGGCATTCAGCTTAAAAATGTAACGGACGCTACGGACTCCACTCCCTCCACCCCTGCCCCTTCCGCTGGGATCGTGGGGGCGCTGATGGAGGTCATGCAGAAGAGGAGCAAAGCGATCCACTCTTCAGATGAAGACGATGACGATGACGATGTAGAAGACTTTGAGGATGAAGATGAGTGGGATGACTGATGACCAGGGCTGCCCAAAAGAATAAGACACTACATTGCTCTTGACATTCGAAATCttataaattgtaatgtaaatggacgaccgatttgctgtacatttttgttgccttttcgcttttttttttttttttttttttttttttttttttttttttattaatctgtgCAATACCTCGTTTAATCTGTAAAGGTTTGTCATGCATCTCCTGTAAAGGTTTTATTTCCCTCTCCTGGATTCACGTGCAATTTGCAAGTTGTCACGATTTGTAGAGTTGAATGTTTTTGGGTCTTTccgtttcgttttttttttttttcttcttttcgtCATTCTTTTAAACGAGCGTCGACTCTAAGGAACAAGATGAGCGAGtcttaaaatactaatataggGACTCGAAGCGAGAACactattttcatacttttctctTATCTTTTCTTATTTAGCACATAGTTTAGCGCtgttattttcttaaaaaccaTATTTAGCCCCATTGCTAATTTGTGAATTTGCTCAGAGTTTGAGGCGGTTTCTATTTTTGCAcgaatcaaaaagaaaaaaagttgggAAACGGCACAACACGGCGGTAATGTTTACACATTGTGTGCTTATAGCTACTATGTCAGGACTCTCCTTAACATTAGATGTGAGAAACACTACAGTTATTAGAAATAACCTATTTGCATTTTACTGGCATTACAACAAATTTCATGGgcacttgttttttttggtttaatgttCATGCGTGCCATTgggtgaacaaaaaaaaaaatcctgaaatggACGTTTCATACGTTCTCAATGTTTTACTAATAATACACTGTGATGCTGTACTAATTCAAAAAGAGGCAGTGGGTCGGATCGTATACTTTCACTGTTTTTAACAGTGCTATAAAGCAAAACGTACGTTTTTCCAGTTTTTGTCCTTTGTTCAACCAGGGTTGCTCTGCATTGAGACTTGAAACCTTTGAAATGAGGTTGAAAaagaattattaaaattgtacactcgaataaatgttaatatttacagaa

Function

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37037 lncRNA upstream 8565 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 130354 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 324623 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 606141 649509 ~ 651593 (+) True G24768
TU36846 lncRNA upstream 632509 623251 ~ 625225 (+) True G24758
TU37074 lncRNA downstream 14524 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 57377 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 284304 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 398529 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 416890 1688978 ~ 1693389 (+) True G25071
XM_043236306.1 mRNA upstream 9444 1245578 ~ 1248290 (+) True LOC122342481
XM_043237155.1 mRNA upstream 146215 970135 ~ 1111519 (+) True grm8a
XM_043237156.1 mRNA upstream 146215 1021037 ~ 1111519 (+) False grm8a
XM_043237157.1 mRNA upstream 288375 958334 ~ 969359 (+) True znf800b
XM_043236823.1 mRNA downstream 16209 1288297 ~ 1289481 (+) False ndufa5
XM_043236190.1 mRNA downstream 57364 1329452 ~ 1331032 (+) False LOC122342419
XM_043236338.1 mRNA downstream 74097 1346185 ~ 1351673 (+) True zgc:162331
XM_043236330.1 mRNA downstream 80315 1352403 ~ 1366070 (+) True c4h12orf56
XM_043236325.1 mRNA downstream 94631 1366719 ~ 1368745 (+) False ssbp1
TU36860 other upstream 592204 654092 ~ 665530 (+) True G24771
TU36683 other upstream 883652 373527 ~ 374082 (+) True G24632
TU36680 other upstream 883910 373527 ~ 373824 (+) False G24632
TU36656 other upstream 962665 293235 ~ 295069 (+) True G24609
TU36577 other upstream 1172772 83688 ~ 84962 (+) True G24555
TU37077 other downstream 16224 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 398424 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 512204 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1843420 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1847441 3119529 ~ 3306758 (+) False erc1b

Expression Profile