RNA id: XM_043237721.1


Basic Information

Item Value
RNA id XM_043237721.1
length 5450
RNA type mRNA
GC content 0.51
exon number 23
gene id srgap1b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4008341 ~ 4039405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTtaaacacacgcgcacacacacacacacacactcacgcccCAACCCGCCCACCAATTGACAGTAGTGTGAGAGAGCGCGAGTGAGAAACGCGCACACCTTACGAATTTTTTGCATACACAATCAGATACTCTCGCATCTTAGAGTCCGATAACCATTGATGTGCGTGGTTGAATGTCATCGCTTTGCTTTACGGACTACAGTTTCCTGCCGCTGGATCACGCACTGAACCTGTGGTTAGATATGACGCATCGGGCACAGTAGGGACGCGTCTCGGAGAAGCAGAACGGTTTCAGACAGAAGGGACTAGCGGATCTGGACTACACAGGCGTCATGTCTAACACGACGAAGagcaaaaaggaaaaggaaatcaTTACAGAGTATGAGAGTCAAGTGAAAGagaTACGGTCTCAGTTAGTGGAGCAGCAGAAATGTCTGGAGCAGCAGACGGACATGCGggttcagctcctccaggacCTGCAGGATTTCTTCAGGAAGAAAGCGGAGATCGAAAGCGAATATTCACGCAACTTGGAGAAGCTCGCCGAGCGATTCATGGCCAAAACCCGAAGCACCAAGGACCACCAACAATATAAGAAGGACCAGAACCTTCTTTCTCCTGTGAACTGCTGGTATCTGCTGCTGAACCAGGTGAGGAGGGAGAGCAAGGACCATGCCACACTCAGCGACCTTTACCTCAACAACGTCATCACGCGCTTCACGCATGTCAGCGAGGACAACATGCGTCTGCTCAAGAAGAGCAAAGAGATCATTTTCCAGCTGCAAGAAGACCTGATGAAGATTCTTAACGAACTCTACACGGTGATGAAGACCTATCACATGTATCACTCCGAGACCCTAAGTGCAGAGAATAAGCTAAAGGAGGCAGAGAGGCAGGGTGAGCGACAGGGCCGGGGCGGAGAGGCCGTCTTCAGCCTGCGCACCGAAGATCGCCATCAGCGACGTAACGCTGCCCGCAAAATCCAGAAGATGAAAGAGAAGCGCCAAGCCAAGTACTCGGAGAACAAACTGAAGGTTATGAAAGCTCGGAATGAATATCTGTTGACTCTGGAGGCCACGAACGCTTCtctgtttaaatattacatcCAAGACCTGTCGCATTTGATTGACTGTTGTGACCTCGGCTACCATGCAGGCCTGAGCCGGGCATTGCGCACCTACCTGTCAGCAGAATACAGCCTGGAAACCTCTCGGCACGAGGGCCTGGATATTTTGGAGGGGGCTGTGGAGGGGCTGGACCCCAGTAATGACCGGCAGCGCTTTATGGAGACTCACCCTACAGCATTCACCCCTCCTGCACGCTTCTCCTTTCAACCACACATGGGAGACCAGGTGAGTCAAATCACGGCCTTGCCGCAGGTGCAAGCTGAGCTCCTCCTCCGATTCCAGCAGCTGCAGTCGCGCCTCTCCACGCTGAAGATCGAAAATGAagagGTGAAAAAGACGTCGGAGGCCACGCTCAGCACTATCCAGGACATGGTGAACATGGAAGACTACGACGTGTCCGAGAGCTTCCAGCACAGTCGCTCCACTGAGTCGGTCAAATCCAGCGTATCAGACACTTACCTCAGCAAACCCAGCCTGGCCAAGAGACGCGCCAACCAGCAGGAAACAGAGCTCTTCTATTTCACAAAGCTGAAGGAGTATCTGGAAGGCAGTAATCTCATCGCTAAATTACAAGCCAAACATGACATGCTGAAGAGGAGCATATCTGAAGGATACCGAGCAGACATCATGACAACCAGCCGTCGACGCAACTCCCACAGCAGGCACCAGGATTCTGGGAAAGCCATCCCACTGATTGTAGAGAGCTGCATTCGCTTTATTAATCTATATGgTCTGCAACACCAGGGTATTTTCAGGGTTTCAGGGTCACAGGTGGAAGTCAATGACATCAAGAACTCTTTTGAACGAGGGAACGACCCCTTGACTGACGAGGAGAATAACCATGACATTAACTCGGTAGCAGGcgtgctgaaaatgtacttccGCAACCTGGACAACCCGCTTTTCCCCAAGGAGAAGTTCAACGATCTCATCGCCTGCGTCCGAACGGAGAGTTTGTATGAACGTGCCCTGTCCATCCGCAAGATCTTGACCACAACACCACGGCCAACACTCGTGGTCATGAGATACCTGTTTGCGTTTCTCAACCACTTGTCCCAGTACAGTGATGAGAACATGATGGACCCTGGAAACTTAGCTATATGCTTCGGTCCGACTTTGATGCCCACCCCGGACCTCCTGGACCAGGTCTCATGTCAGGCTCATGTCAACGAGGTCGTCAAAACCATCATCATCCATCATGAAACCATCTTCCCTGACACCAAAGAGCTCGAGGGACCCGTTTATGAGAAGTGCATGAGCAATACGGAGTACTGTGAAAGTCCGTACAGTGAGCCTGGAGCGTTTGAAGAAGGGGAGCAGGACGGAGGGACTGAAACACAGACGAGCGAGGAGGAAGGGGAGCCTGTAGAGGCCATAGCGAAGTTTGACTATGTGGGACGGTCCGGACGGGAGCTGACCTTTAAAAAAGGAGCCACTCTGCTGCTGTTTCAGAGAGCGTCTGAAGACTGGTGGGAGGGACGACACAACGGCATTGACGGCCTCATACCACACCAGTACGTCACGCTGCAGGAGGATGAGGCCATGTCAGACACTCTGAGCCAGAAGACAGACAGTGAGTCCAGCACTACACCTTCAGATGAAGTGAGCTCCAGACGGTCGCTTACGTCTCCTACTGAACCAAGAATCCCTGAGACCTTCATCAGCcgACACCGGAAGCGGACCGAAGCCCTTCTGCGGCGTGTCCCTGGACGCTTAAGCGACGGTCACTGTCACGGCAATGGTCTGGAACGCAGCTCTCCTCCCGTAACGGTGACGGTAACGGGGCATTTCAGCCCGCGGGAGCTGCTGCGTGGAAACAGCTGTGTGGACAGTCCTGAGCACCACCGACGCACAGGACACGACGCCACCTCCAACGGCAACGTCACTGCCAACATCAGCCGCCACGAGTCCCTGCGCAGGGACAGAGAGCGGGAGAGTCCTCCGATACGCCAGTCACCGTCCACACTGCATTGTGGGTTACCCATTCAACGCTCCCAGACGCTGAACCCGCACACAATGGCACAGgatTTAGAGGAAACCATGAGCCTGGCCTTGAACGAGCTGCGTGAGCTGGAAAGGCAGAACGGGAAGACCGCTGCTCCTGACCTGGTTTTGGACACCCTGGAGCAGGTGAAGAGCAGCCCATCCTGCCCTTCCGGCTCCACCCCCTCCAGCTTGTCCAGCCCGTCAGATTCCCCGAGCCCCCTCAGCCCTATCAGCCCCCTTCCTCCTCTCCCACCTCTGCCCGGCCCTTCGTCCCGGCGCTCCAACGACCCCGTTGCCACCTTCAAACCCGTGGCCTCGCCCCGTATGGGCGTGACGCTCCGTCCACCCGCTTTGCGGCCCAAACCGCCCATTCTCCCCAAAGccaaccctccaccttcccagcagccccagaaTCCACCCTCGAGTTTCAGCGGCGACAAATCCGGCACTATGTAAGCCAATGGGTTCAACCGAAGGAAACAGGGTTTAAGACTCGACGACTGCTCGAAGAACAGGGTTAATCACTTAATAATGACATGATTGTACGGCCGATAGCTAGTTTATGCGCAGAGCGGTCTGATAGCGTTAGTCTACGATATTATATCCATAAATGTGTTGTCAGGGtggtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtattctcaAAGTGAATAGGACTTTACCGTGTCTGTGTGTAGATACATTTACGAGGAACACATTCAGAGACAGCGGAGAGAGACTGCTTGTACAGGAAGTACCGTTGTtgggttttttgggggggggaaATGTTCCATTGAGTCGGTGCAATGTATTTTGAGTGCTTTGATTTGTTAGGCCTTACTACCACAAGAGGGATGTGTCGAAAACGCTGTTTTTTATAAGttgctgctgctttttttttgatgcttcGATTCGAGTTACAGGACTCCCGGTGCCTCTTGGGAAAATAGCTGTTTCACTTTGATGGGGAATGTAAtttcgtttattttatttcgttCACTTAGCCTTTCCCGCAAGGCGACTGAAGAACACAGAATGTATTCCATGAATGTTCCactgtttttcctgttttcacTCGAAAAAATACCACGCTAAGCCTTGATCACCAGATGAACCTCCCCCTTTACCGTGGAAACCAAACCCTGAAGCCTGATTGGACGACATGGGAGGGACACAACCCTAACATTCCGAGGGCAAACGCGCGAACGAAGCTTTAATGAAACATCACACCGAAGGCGCAAATAAGACCTTCTGGGGAGGATTGCGAAGAAAATTCCGAAAGTTAGTGCAAAAGGCCACGCCCTCCCTCCGGTCGTTCAAGTACAATTTCCACTGCTGCTCCACTAATGGACGATAACGGTGTTCGATCCTTGATTTTCAGCGTCCCCTGTGCTTCCAGTGTACGTGTGTTTGTACGATATCGTCAATGGCAGACTCTTTGGAGCACACTAACCATACATGGCtctcctgtgtgtgtctgtgtggggGTTTTTGCATGATAAAATGCGCTTAGAGTAGTTCAGAGTACTAGATGATGGATAATTCATGCTTGTACATGACAATTTaagtgtttgagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagtaaaagaGAGCTAAAAAGAGTGCACTGCACTTGTAGACAAGAttgtgggtttgtgtgtgtgtgtgtgtgtgtgcgggatagagagtgtgtgtgcgtgtgtgagatcGAGGGTGTTTAGTCCAGTGTGTAAATATGCATGAGGGTGAGTAGGTTTAAGACCGAACGGCCTTGGTTCACTTTTTTATACACTAACGATGAttgtttttccactttttttgacTGCTGCTCTTATGTTTTTCTACCTGTTCTATTTTTTTACCTTCATTTCTTACTGGTGCTCTTTCATACGACCGCGTCCGCTTGTTGCCGTATATTCGATTTTCCAAGCAATTCGAGATTATCTCCCCACcctcccacacaaacacacacacacacacacacacacacacacacacacacacactgtgttcaCATGAAAGTGCCTTTCAGGATGCATGTTGAATGCAGGAGCCTAGTCTGCCAAGGGTGTGTGCTCCCGTCGCTCTCTGAAGAGTCGTTCCccaagttaaataataataataataacgctaGAGCTATTTCCAGATATTTAATAACCTGAAcgaataataaatatgtacatttaatccATTGTGATGTCGCACTTTCATGTATAGGATTGTATTGGCATGTAGCATTAAATCATGTTccagtgcattttaaaatgtgtcgAAACTGAATGTCTTTGAAATAAAGGAAAGTTGATATGTCTCAAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250755.1 lncRNA upstream 5135 3988683 ~ 4007148 (+) True LOC122343346
XR_006250756.1 lncRNA upstream 204385 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 204721 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 303431 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 305219 3706859 ~ 3707064 (+) True G25536
TU38355 lncRNA downstream 89518 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 89934 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 90739 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 92703 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 185178 4224583 ~ 4227231 (+) True LOC122342475
XM_043237758.1 mRNA upstream 36496 3973075 ~ 3975787 (+) False nfyba
XM_043237759.1 mRNA upstream 36496 3973225 ~ 3975787 (+) True nfyba
XM_043237744.1 mRNA upstream 53023 3909143 ~ 3959260 (+) False slc41a2b
XM_043237743.1 mRNA upstream 85402 3909143 ~ 3926881 (+) True slc41a2b
XM_043237733.1 mRNA upstream 106352 3897077 ~ 3905931 (+) True aldh1l2
XM_043237731.1 mRNA downstream 7646 4047051 ~ 4062047 (+) True ipo8
XM_043237732.1 mRNA downstream 7646 4047051 ~ 4062047 (+) False ipo8
XM_043237735.1 mRNA downstream 24452 4063857 ~ 4097271 (+) False tmtc1
XM_043237734.1 mRNA downstream 24453 4063858 ~ 4097271 (+) True tmtc1
XM_043237741.1 mRNA downstream 58658 4098063 ~ 4102180 (+) True ovch1
TU37969 other upstream 273689 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 510189 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 541148 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 564709 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 570783 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 190224 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 193503 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 510758 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 510758 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 890066 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile