RNA id: XM_043237732.1


Basic Information

Item Value
RNA id XM_043237732.1
length 3869
RNA type mRNA
GC content 0.51
exon number 25
gene id ipo8
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4047051 ~ 4062047 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGGCAGGGCTGCCTGTAAGATCCGAGACATCTGATCGTCCGCGCATCTGTCCGATAGTCCAaagtttattcaaattaatcCATCGCACCGGGCCCAATGGATCCCAATCGAATCATACAAGCTCTGAAGGGCACCATAGATCCGAATCTCAGGCTAGCGGCTGAGAATGAGCTCAACCAGtcctACAAGATCATCAACTTCGCCCCAACTCTGCTGCAGATCATTGTTTCGGACCAGGTGGAGTTTCCTGTCCGGCAGGCAGCTGCCATCTACTTGAAGAACATGGTGAGTCAGTACTGGCAGGACCGAGAGCCCACACTGGGAGAGGTGGTGTTTCCTTTCAACATCCATGAAAACGATCGCGGACAGATCCGAGAAAACATGGTGGAGGCCATTATTCGCTGCCCAGAGTCTATAAGGGCTCAGCTGACGGTGTGTTTGCGTGCCATAATAAAACACGACTTTCCTGGACGGTGGACGGGTGTAGTGGACAAAATTAACCTATACCTGCAGTCACCAAACAGTGGGAGCTGGTACGGGAGTCTGCTCGCTCTTTACCAACTCGTCAAAAACTACGAGTTTAAGAAGGCTGAGGAGCGAGACCCTCTGTTAGCTGCCATGCAGATCTTCTTGCCCCGGCTCCAGCAGCTCATCACTCAACTCCTGTCTGATGCCACCTTCATCTCAGTTCTGATCCAAAAGCAAATCCTGAAGATTTTCCACGCTCTTGTACAGTATTCCCTACCGCTACAGCTGATCAATAACACCGTCATGACCCACTGGATGGAGATCCTGCGCACAGTTGTGGATCGGGACGTCCCTGCAGAAACCCTGGAAGCTGATGAGGACGACCGACCGGAACTGATCTGGTGGAAATGCAAGAAATGGGCTCTGCACATCATCATGAGAATGTTTGAGAGATATGGCAGTCCAGGAAATGTGACGAAGGAATATGTGGAGTTTGCAGACTTTTTCTTGAAGACGTACGCTGTAGGAATCCAGCAGGTCTTGTTGAAAGCGATTGGCCAGCACCGGCAGAGGCAGTACGTGAGTCCTCGTGTCCTCCAGCAGGCTCTGAGCTACATGACTCAGGGGGTGTCTCACTCGCTCACATGGAGACAGATGAAACCGCACATGCAGACTATCACTCAGGAGGTGGTGTTTCCTCTGATGTGCTATAAGGATGAAGATGAAAGACTGTGGCAGGAAGATCCGTACGAGTACATCCGCATGAAATTTAatATGTATGATGATCACGTGTCTCCAGCCACGGCCGCCCAGACTCTGTTGTGTACAGCAGCCAGGAAAAGGAAGGAGgtcTTGCCTCAGATGATGGAGTTTTGCCATCAGATCCTCATGGATCCCAACGCTGACCCCCGCAGGAAGGACGGGGCCCTGCATGTGATCGGTGCCTTGGCTCAACCCTTGTTAAAGAAGCGGGTGTACAGGGACCAGATGGAGCTCATGTTACAAAACTATGTGTTTCCTCTGCTCAACTCTAATCTTGGCTACTTAAGGGCCCGGtcgtGCTGGGTGCTGCACTCCTTCAGTCCTCTGAGGTTTCATAATGAGCTGGTCCTGAGAAACGCTGTGGAGCTGGTCAAGCAGAACCTGGTTGATGACAAGGAGATGCCTGTCAAAGTGGAGGCAGCCATTGCACTGCAGACGCTGGTCAGGAACCAGGAGCAAGCCAAGGTCTACGTCCGACCCTTTATCAAGCCTGTGATGCAGGAGCTGCTGCACATCATCAAGGAGACGGAGAACGATGACCTCACCAGCGTCATTCAGAAGATGATCTGTGAATACAGCGAGGAAGTGGCCGTCATCGCCGTGGATATGACGCAGAACCTGGCCGAGATCTTCAGCAAGATTCTCCAGAGTGAAGAATACGAGGAAAGTGAAGATAAGACTGTGATGGCTCTCGGTATCCTCAGCACCATAGACACTATCCTCACAGTCATGGGGGACCGAAAAGAGATCAGTCAGCAGCTGGAGGGAATATGCCTGCAGGTGATCGGTCTCGTCCTCCAGAAACCCATCATAGAGTTTTATGAGGAGATCTTGTCGCTGGCGTTCGGACTCACCTGTTATTCCATCTCCCCTCAGATGTGGCAGCTGTTGGGGGTCCTGTACGACGTCTTCCAGCATGACTGCTTTGACTACTTCACAGATATGATGCCCCTCTTGCACAATTATGTTACTGTGGACACAAATATGCTGCTATCAGACCCCAAATACCTGGAGGTCATTTACACCATGTGCAAAAAGGTCCTAACTAGCGATGCTGGGGAAGACCCAGAATGCCATGCTGCTAAGCTTCTAGAGGTCATTATATTACAGTGTCGTGGACGTGGCATTGACCAGTGTATCCCTCTGTTCGTGGAGGCCGTGTTGGAGCGGTTAACACGAGGTGTGAAGTCCAGCGAGCTTCGCACCATGTGTCTTCAGGTGGTAATCGCAGCTCTGTACTACAGCCCCACCGTACTGATACACACACTGGAGAACATCCGCTTCCCTCACAGCCCAgagccaatcacagcacagtTCATCAACCAGTGGATGAACGACACCGAGTTCTTCTTAGGACTGCACGATCGTAAGATGTGCATCATTGGGCTGAGTGTTTTGATGGAGCTGCCCAGCCGCCCCGCGGTCCTGGAGGAAGTTGCAGGTCAGATCGTTCCCtccatcctcctcctcttcttggGTTTAAAGCACATCTACTCCTCCCGAGTGCTCAACAAACCGGAGCAGCTCGCCAGAGCTCAGGGcacagaggaggaagagaacgAGGAGATACCTAGCGACGAGGATGAGGTCGGACAGAAAGGCATGGCCCTGCAGTCGTCCGGCGCTCCCACTGGGAATGacaatgaagatgaagatgatgaggaCGATGATGAATACTGGGATGATGAAGGTCTGGAGGGGACCCCATTAGAGGAATACAGTACACCACTGGACTATGACAACGGAGAGGATGAATATCAGTTCTTCACCGCCTCCCTGCTCCGTGTTCAGAGTTCAGATGCAATCTGGTATCAGTCCCTCACATCACCTCTGAGCGAAGACCAGAGAAAGCAACTGCAGGAGATCTATAACCTTGCCCAGCAGAGGAGGAGTGCAGGAGTCAAGGGACTGTGAGATGTTCCAGTTGTTCTGAGGCAGGTCGGGGATACCTGACACTTCGGATTTGGATCTGTACAAAGTTCTGACGCCGAAAACAGCTTGAACTCTGGTGACTAGAGACATCTCACTCAGGGTGGATGGGATCTTTAACCCAGGACCCAAAGCAAGCTCTTCAGATTGTTGACTCTTAATAGGAACACTGAGACATCATCAAAACTGGTCAGAAAGGCCCCGGTGAGGTCGAAGAGGTTATTCTGGGTCACCCATTCCctgaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcgcaTTTGTACAGAATTTTgggtgtttgtgcatgtgtgcagacgtatgtgtgtgtgtgtgtgtgtgtgtaagtaatTGAAtgttatatattcaatatacaGTCTCTCCTCCATTTGCAATGAGTCAGTAAGAAACTCGACCGAGGCTGTGAAGTGAGGCATGTCAAGacgagccagagagagagacggacggACACCGCTTCAGACTGACACACAGATGGAGGGATTTGTCACGTTGGTCAGTGCCTTCAGAGATACGTAGGCATTTTTCTGCCCAAACAGATCATGTGCACTGGCTAGAAGTCAGAAGGACGATGTTTATAGCTGTcgtatgtttgtatgtttcagagtttgtttttgtaacagTCAGTTTTCAGAATTAACTTAAGTCATAAAAGTTAATATAACATGAACGGTTGAACGGT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250755.1 lncRNA upstream 39903 3988683 ~ 4007148 (+) True LOC122343346
XR_006250756.1 lncRNA upstream 239153 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 239489 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 338199 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 339987 3706859 ~ 3707064 (+) True G25536
TU38355 lncRNA downstream 66876 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 67292 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 68097 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 70061 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 162536 4224583 ~ 4227231 (+) True LOC122342475
XM_043237723.1 mRNA upstream 7646 4008341 ~ 4039405 (+) True srgap1b
XM_043237735.1 mRNA downstream 1810 4063857 ~ 4097271 (+) False tmtc1
XM_043237734.1 mRNA downstream 1811 4063858 ~ 4097271 (+) True tmtc1
XM_043237741.1 mRNA downstream 36016 4098063 ~ 4102180 (+) True ovch1
XM_043237742.1 mRNA downstream 36174 4098221 ~ 4102180 (+) False ovch1
XM_043237737.1 mRNA downstream 40731 4102778 ~ 4113721 (+) True lmf2b
TU37969 other upstream 308457 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 544957 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 575916 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 599477 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 605551 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 167582 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 170861 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 488116 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 488116 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 867424 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile