RNA id: XM_043237733.1


Basic Information

Item Value
RNA id XM_043237733.1
length 3532
RNA type mRNA
GC content 0.50
exon number 22
gene id aldh1l2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3897077 ~ 3905931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGGTTCCGCCGCCACACTGACCGCATACAGGCAGTCAGTCAGCGAACCGCAGGTGTGAGTTTACAGTACCGCATGCTCCCAGGACCTCAGACCTAACCTTTCTATAAGTCTTTGTAATATTTCCACCATGTTGTGGACGGCGAGCACGATCATAAGGAAATTCTCTTCGAGCTCTGCTTACTACCAAAACAAGCTGAAGCtggctctgattggccagagCTTGTTTGGACAGGAAGTGTACACAAACCTCCGCAAGCAGGGCCATAAAGTGGTGGGTGTATTCACAGTTCCTGATAAGGATGGCAAGGCGGACCCCCTGGCGGTGGTGGCGGAGAAGGACGGGACGCCGGTGTTTAAGTTCCCACGGTGGCGGGTGAAGGGTAAGCCCATCCCAGAGGTGGTGGAGGCGTACAAAGCAGTGGGCGCCGAGCTCAACGTCATGCCCTTCTGCTCCCAGTTCATCCCCATGAACGTGATCGACTTCCCCAAACATGGCTCCATCATTTACCACCCCTCCATCCTGCCTAGACACAGAGGAGCCTCTGCCATCAACTGGACATTAATCGAGGGTGATAAGAAAGCAGGATTTAGTATATTCTGGGCTGATGATGGTTTAGACACCGGCCCGATCTTGCTCCAAAAGGAATGTCCAGTAGAGCTCAATGATACAGTGGACACGCTTTATAACCGCTTTCTGTTTCCAGAGGGCATCAAGGCTATGGTAGAAGCTGTACAGCTCATTGCAGACGGCAAAGCTCCAAAGGTCCCTCAGTCTGAAGAAGGAGCCAGCTATGAGGGAATCCAAAAGAAATCCAATGCCAAGGCGAATATGGCTCAGCCGGCTGAGGTCATCCATAACTGGATCCGAGGTCATGATAAAGTTCCGGGCGCCTGGATTGTGATCGATGGAAAGCCAGTAACGCTGTACAGCTCATCAGTGCTGAGCGGGTCAGTACCCCCAGGTCAGCCAATTGAGGTGGAAGGGGCATCTCAGCCTGGACTCATTGCCAAATCTGGGCTTATTCTGTTCGGGTCTGACGGAAAAGCGCTCCAAGTGAAGAACCTGCAGTTTGAGGACGGAAAGATGATTCCCGCCTCCAAATACTTCTCGTCAGATGAGGCTGCCAGTTTGGATCTCACAGACGATGAGAAGAAAATGGCAGAGGAAATCAGgGCGATCTGGAAAGGTATTCTGAGTAATGTTCCAGTTGTTGATGACACAACCGATTTCTTCAAATCTGGAGCTGCTTCCATGGATGTAGTCAGATTGGTGGAGGAGGTGAAGCAGAAATGCGGAGGAGTTCAGCTTCAGAACGAGGACGTCTACATGGCCACCAGCTTCCAGAGCTTCATCCAGATGTTCGTCCGCCGCCTGCGAGGAGAAGACCAAGAGGAGGAGCTGGTCATCGACTACGTGACAAAAGACGTCAATGACATGACGCTGAAGATGCCATATCAGTGTTTCATCAACGGCCACTTCGAAGATGCAGAAGATGGAAAAACATACAACACTGTGAACCCAACGGATGGCTCGGTGATCTGTAAGGTTTCCTATGCGTCCGTGGCCGATGTGGACAGAGCGGTTAGTGCCGCCAAAGAGGCCTTCGACAACGGGCCTTGGGGTAAGATGAACCCTCGTGACCGCGGACGCCTGCTCTACCGCTTGGCTGACCTGATGGAGGAACACCAGGAGGAGTTGGCTACTATTGAGACGATTGACTCTGGTGCCGTTTATACTCTGGCCTTGAAAACGCACGTTGGCATGTCCATTCAGACGTTCAGATACTTTGCTGGCTGGTGCGACAAgatccagGGCTCGACGATACCTATCAATCAGGCCAGACCCAATCGCAATCTtacctttacaaaaaaagagcCTCTGGGCGTGTGTGCCATAGTCATTCCTTGGAATTACCCGCTTATGATGCTGGCATGGAAGAGTGCCGCCTGTCTGGCAGCAGGAAACACGCTGGTCTTGAAACCCGCTcagGTAACCCCACTAACCGCACTGAAGTTTGCTGAGTTGACAGTCAAAGCTGGCATTCCCAAAGGAGTCATCAACATTGTACCAGGATCAGGTGGCCTGGTCGGGCAGAGGATGTCCGATCACCCAGACATCCGTAAGCTGGGTTTCACCGGCTCTACCCCCATCGGCAAACAAATCATGAAAAGTTGTGCAGTCAGTAACTTGAAGAAGGTTTCTCTGGAGCTGGGCGGCAAATCTCCCCTCATCATCTTCAGCGACTGCGACATGGACAAAGCGGTCAGAATGGGCATGAGTTCTGTTTACTTCAACAAGGGAGAAAACTGTATCGCTGCGGGCCGGCTGTTTGTTGAGGAGTCCATCCATGACGAGTACATCAGGAGAGTGGTGGAGGAAATCAAGAAGATGAAGATCGGAGATCCTCTGGATCGCTCCACGGATCACGGGCCTCAGAACCACAAGGCTCACCTGGACAAGCTGGTGGAGTACTGTGAGCTCGGCGTGAAGGAGGGGGCAACGCTTGTGTATGGAGGAAGACAGGTGGACAGACCAGGCTTTTTTATGGAGCCCACAGTTTTCACAGGTGTAGAGGACCACATGTTCATCGCCAAAGAGGAATCATTTGGCCCTGTTATGGTGGTATCCAAATTCAAAGATGGTGATGTAGATGGAGTTCTCAGCAGAGCCAATGATACAGAGTTCGGCCTGGCTTCTGGAGTCTTCACACGGGACATCAACAAGGCCATGTATGTGAGCGAGAGGCTGGAGGCGGGAACCGTGTTCGTCAACACCTACAACAAAACCGATGTGGCAGCTCCCTTTGGAGGCTTCAAACAGTCCGGGTTTGGGAAAGACCTTGGTGAGGAAGCCCTGCACGAGTACCTGCGGACTAAAGCCGTGACCGTGGAGTATTAATTGAAACCAGCGATGGAAAAGACTGCATGGCCCGCGACTGCAGCTCGAAGCGGGCTTGAAGCAGGTTTGATCCGGAAAAGCATTTCCTGCCACGACTACACTGATGTGCCTACGTTTTTTTATCGCCTTTTTCTGGAAATGTTTGGAGTAGGACAAATGCTGTCTACACTGGCtagcaatgttttaaaatgggaaggaaaaaaatggcaaaagacCTCCAAGTGGACCCACGGACACCGAATCAGCcacaaatcagatttttaaCTACTAAAACACTGGGGTATCATGCGGAGTCAGTTTCAAGAAGTAGCCACAACACTATAATGATCTTGAGCGTTACCAGAGTACTTTGAAGACGAGTCTGTCCACGCTGAACGTGGCTGAAGCCGAGATAGACACAAAGTAACCATCAAAATGCTCGTCATATCACAACTGGTTAGGATAAAACCGCTCATTTACGCAACTGTGCACACGTTTGAGGTCAGTACGATTTTAGGCTTTTGAaattaaggctgcatttatttgatacagtaaaaacaataacattgtgaaaactccatttcaatatatagtaaaattgtACTTATTTCtatgaaattttttttgtgcacagctaaattttcagcatcat

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250756.1 lncRNA upstream 89179 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 89515 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 188225 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 190013 3706859 ~ 3707064 (+) True G25536
TU37947 lncRNA upstream 194706 3701834 ~ 3702371 (+) True G25535
XR_006250755.1 lncRNA downstream 82752 3988683 ~ 4007148 (+) True LOC122343346
TU38355 lncRNA downstream 222992 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 223408 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 224213 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 226177 4132108 ~ 4132552 (+) True G25827
XM_043237747.1 mRNA upstream 1202 3889437 ~ 3895875 (+) True samm50l
XM_043237555.1 mRNA upstream 127234 3760584 ~ 3769843 (+) True sult4a1
XM_043236806.1 mRNA upstream 195863 3678245 ~ 3701214 (+) True adipor2
XM_043237790.1 mRNA upstream 221784 3660617 ~ 3675293 (+) True LOC122343370
XM_043236953.1 mRNA upstream 296071 3579628 ~ 3601006 (+) True LOC122342820
XM_043237744.1 mRNA downstream 3212 3909143 ~ 3959260 (+) False slc41a2b
XM_043237743.1 mRNA downstream 3212 3909143 ~ 3926881 (+) True slc41a2b
XM_043237758.1 mRNA downstream 67144 3973075 ~ 3975787 (+) False nfyba
XM_043237759.1 mRNA downstream 67294 3973225 ~ 3975787 (+) True nfyba
XM_043237723.1 mRNA downstream 102410 4008341 ~ 4039405 (+) True srgap1b
TU37969 other upstream 158483 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 394983 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 425942 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 449503 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 455577 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 323698 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 326977 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 644232 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 644232 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 1023540 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile