RNA id: XM_043237734.1


Basic Information

Item Value
RNA id XM_043237734.1
length 3733
RNA type mRNA
GC content 0.50
exon number 20
gene id tmtc1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4063857 ~ 4097271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTCGCTAACATTACGCATTCAGAGCTGTAACGCTGTCCGGGCTTCGGCGCAGCACACGGGCTATGGAACGGGACGGCTTTCCTCTTTTTGACTCCCACGAGCAGCATGCGAGACGGGGACCGACATGACAGCGAACAGCCGAGGGACCAAAGCCGCCCCTCTCCCGGTGCAGCGGCGGCTGTCGGCGCTACCGAGGCCGGTGGTAGGAGTCCGGTACGCCGCGCTGGTGGCGGTGTGCGCGCTCTGCTACAGTAACTCTCTCTGGGGGGAGTTTGTGCATGATGATATATGGGCCATCACCAACAATCCAGATATCAGACCGGGCTCCAGCCTCCGGAGCATCTTTACCAATGACTTTTGGGGCAAGCGGATGGCTGATAACACCAGCCACAAATCCTACCGTCCGCTCTGCATCCTCACTTTCAAGTTAAACATTTTGCTGGGCGGCATGACTCCGTTCTACTTCCACCTGGTGAACGTGTTTCTGCACTGCATGGTGACGGCGCTGCTCATGCACACCTGcgaaaagtgtgtgtttgaagacAGCAACCTCTCTTTTCTCACCGCACTGCTTTTCTCTGTTCACCCCATTCACACCGAAGCTGTGTCTGGGATCGTCGGGAGAGCAGATGTTTTAGCCAGTGTGTTGTTCCTCCTGGCCTTTCTCTCCTATATTAGgaGTGTGTCAGCGAGCAGAATGACTGACGAGTTTCCTCCCACAGTGTCTGTCTTGTCACTGGCTCTCAGTCTGTTGTTGGGCACCTGTGCCATGCTGGTGAAAGAGACGGGCGTTACGGTGTTTGGTGTGTGCGTCTTATACGATTTCCTGGTGCTCTGCCGCAAACCGCTCATCTCGCACCTGTCGCGCTCCGGGTTGAAGGAGCTCGTCGGAAATTCCAGTCCGTTCGTCAAACGAGCTTGCATCATCTCGCTACATGTTACAGTCATCATGTCTTTACGCTTGTGGTTGATGGGTGGATCCATGCCGCTGTTCTCAGAGCAAGACAATCCGGCGTCCTTCTCTCCATATCTGCTCACCAGGTTTCTTACATACTGTTATCTGCTCTCCTTCAATGCCTGGCTCTTACTGGCTCCCACAGTGCTTTGCTACGACTGGCAGGTGGGCAGCATTCCGTTAGTGGAGTCTCTATGGGACGGACGGAATATCGCTTCCCTGGCTTTGGCTTTCGTCATGCTGGCGCTGAGCCTGAACTGTGTTACACGCCTACAGaAGATGAAAGGAAAGGAGGTGTTGGTGGGCGTGCTGTTCCTGGTCTTTCCCTTCATCCCAGCCAGTAATCTGTTCTTCCGTGTGGGATTTGTGGTGGCGGAAAGAGTTCTCTACATGCCCagTATGGGTTACTGTGTTCTGGTGGTGCACGGCCTGAACAGACTGTATTCAGTGGTCAGTCGGTGGGGAGCAGCCGCACTAACTGTGTCCATGCTGgtcgtcctcctcctcttctcctggAAGACCGTCCAGCAGAATGAGATCTGGCTCTCTAGAGAAGCCCTGTTcagATCTGGCATTCAGACTTTACCTCACAATGCTAAAGTTCATTACAACTATGCCAACTTCCTGAAGGACAGAGGACGAAACCAAGAAGccatttatcattataaaacGGCCCTTAGACTGTACCCTCGACATGCCAGTGCTCTGAATAATCTGGGCACCCTGACTCACCAGGCAGAGGAGGCTGAAGTTTATTACAGGAGAGCGCTGGATATTAACCCTCAACACAACAGAGCTCTCTTCAACCTGGGCAACCTTCTGAAGTCTCAGGGGAAGGAGGAAGAGGCGGAGAGGATGTTAAAGGAATCGATTCGTTTCGGTCCCCATTTTGCTGATGCGTACTCCAGCCTGGCCTCTCTATATGCTGACCagGGACATTCAAAAGAAGCAAATGAAATTTATACCAAGGGTATTGAGAACTGCCCCGACAGTTCTGACCTCCATAACAACTATGGTGTGTTCCTGGTGGACACGGGTCATGGGGATCGTGCAGCCTTTCATTACCAGGAAGCTGTGCGTCTCAAGCCATCTCACTATGTTGCCATGGTGAACCTGGGTCGTCTTCTTCGCTCGTCCAATGACAATAAAGAGGCAGAGCTATGGTACAAAAGggCACTGCAAGTGGTTCGTAAAGTGGATATCCTGACCCCTCTTGGGGCTTTATACTACAACACCGGTAGATACGAGGAGGCACTGGAGGTTTACAGAGAGGCGGCCACACTTCAGCCCGAGAGCACTGATATCTGGCTCGCCCTGGCGCAGGTTTTAGCTATGGCGGGTCGATCTGGGGAGGCCGAGAAAATGACCCAGGGCGTCATTTCAAAGACCAGCAACTGCATTGAATGTTACCGCTTGTTGTCTGCCATCTACAGCAAACAAGGCAACCATACAGAGgcgtTGGATGCGTTGAAGACAGCACTGCAGCAGGAGCCGTCAGACCCCGGGGTGAGGGCAGAGCTGCACTTCTCGATGGGAAACCAGCTCAGAGAGATGAACGAACTCGATCGAGCCTTCCAGAGCTACAAGCTTGCTGTCGAGCTCAAACCTGACCAATCACAAGCCTGGATGAATATGGGCGGGATTCAGCATATCAAGgGAGACTATGCAGCAGCACGAATGTACTACCAAAGAGCTCTTCTCCTCTCACCCGGCTCCAAACTGCTGAAGGAAAACCTGGCCAAGCTGGACAGGCTAGAGAAAAAACTCCAAGGGGCCTAGAGGAAAAGCGTGACCTGAACTATCGGCCAAATGATGAAGGACAAGCAACCGAGAGACAGaagggtgaagagaggggcgaaCTACGGACTCAGGAGATGATTAACGACCTCTTTCTTCACCTCCAGAGTTTACAGAGAGCCTCTCGGATCGAACTAATCCAAAAGACCGACTTTTTTTAGCCTCTACATCCAGGGCTGGACCACGCAGATACCATTGACCTCAACACATCACCGCAGTATCTCACACCAACATATTTAACAAGTCCTCATCCCTTTTTCCCCCCGCGTGTCGTCCCAAGCACTCAGACCAGCACAGATTGAGCGTTTGTTGTTCTTGTATGAATCGGAGCAGAGGCACCATCTCTGAgagggatttttattttattttttccggAGCCGTTCCGCTCGACCACTGCGGCTCCGCTCCGCTGATTGCAAAACCTCAGCAAGCATTTCAGACAAATGCTCCGAGTTATCAAATATGACGAGCTGTGTTCCATGAACACGGCTGATCGGTTGCGGGTGggcttgtgttttgtgttgttttttttctacgtaatgatttttaaatgaaggagaaaaaaaggacAGAGTCGTTCCTCGTGtgctttaattagattttttttttatcttgtacATGCATCAATATTGTGGAATGTATCTTGGACTAAAGGCATATTGACCTGTGCAGTGAATTGCATATCATTTTTATCCTCATAAGCTATAATACTGAAGTCTATTTAAATCGGAATTACGAATCATACATAATGACGTATCCTTGAATTAGGGGGATTTTAGTCATATTTTCAGTGGCCGGAATTTGTCATGCGGTACTCTTGATTACACCGTAATCTTTGCACTTACATTTCGTTGCCATAGGAACTGTTATCAAGAACATTTCTTGAATTCGGCAGAAGCAGCAGCCGTGCTAAACATGTCATAGCAGAAACCAATGTGAAGTAATGtatgattatttaataaatattatccAGTACCA

Function

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250755.1 lncRNA upstream 56710 3988683 ~ 4007148 (+) True LOC122343346
XR_006250756.1 lncRNA upstream 255960 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 256296 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 355006 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 356794 3706859 ~ 3707064 (+) True G25536
TU38355 lncRNA downstream 31652 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 32068 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 32873 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 34837 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 127312 4224583 ~ 4227231 (+) True LOC122342475
XM_043237731.1 mRNA upstream 1811 4047051 ~ 4062047 (+) True ipo8
XM_043237732.1 mRNA upstream 1811 4047051 ~ 4062047 (+) False ipo8
XM_043237725.1 mRNA upstream 24453 4009234 ~ 4039405 (+) False srgap1b
XM_043237741.1 mRNA downstream 792 4098063 ~ 4102180 (+) True ovch1
XM_043237742.1 mRNA downstream 950 4098221 ~ 4102180 (+) False ovch1
XM_043237737.1 mRNA downstream 5507 4102778 ~ 4113721 (+) True lmf2b
XM_043237757.1 mRNA downstream 18195 4115466 ~ 4121307 (+) True kitlgb
XM_043237763.1 mRNA downstream 28077 4125348 ~ 4126807 (+) True lsm8
TU37969 other upstream 325264 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 561764 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 592723 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 616284 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 622358 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 132358 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 135637 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 452892 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 452892 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 832200 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile