RNA id: XM_043237736.1


Basic Information

Item Value
RNA id XM_043237736.1
length 2621
RNA type mRNA
GC content 0.50
exon number 16
gene id hcfc2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3976307 ~ 3981828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGCTACGAACTGTTTGCATGCAGTCCGCCTTTGCTCCAATGCAACTGTGCAAAATCAAACCGATAACCTATTATGATTAATAAGGGTCCCATATGGAAACGAGTGCGGTCTTACGCCGGACCTGTTCCGAGGGCGAGGCACGGGCACCGGGCCGTGTCCATCCGAGAGCTGGTGGTTGTGTTTGGAGGTGGAAACGAGGGAATAGCGACCAATCTGCATGTTTATAACTCGGTGACCAGGCAGTGGTTCCTGCCAGCAGTTAGGGGTGATATCCCACCTGGTTGCGCCGCTCATGGCTTTGTTTGTGAAGGCACACGGATCCTGGTGTTCGGAGGGATGGTTGAATTTGGGCAGTATACCAACAGCCTCTATGAACTGCAGGCCAGTCGATGGCTGTGGAAGAAACtgaagccccgcccaccgagGAATGCATCACTTCCATGCCCACGGATTGGCCACAGCTTTACTCTTCATGCTAATAAGTGTTACCTTTTTGGTGGCATGGCCAATGACAGTGAAGACCCAAATGGAAACATACCACGGTATTTAGACGACTTCTACGAGCTGGAGCTGCAGGTCCAGTCTGGGGTTAAAGGCTGGAACATCCCTGAAACCAAAGGTGGAGGTCCGTCAGCCAGAGAATCCCACAGTTCTGTGATGTACTGTGGAAAGGGTTCAAGTGGACCAAAGCTGTACATATTTGGGGGCATGTGTGGGCACAGACTGAATGATTTGTGGCAACTAGACTTTGAGACTATGACTTGGTCATTACCTCTAATCAGAGGTCAGCTGCCATTACCCAGGAGTCTGCACACCTCCAATGTGATTGGAAACAAGTTATATGTGTTTGGAGGCTGGGTTCCCATTGGACAGGCAGAGGATGCGCTCGCCGCCGATGGAGTCAAGTGGGTCTGCACCAACTCTCTTTCCATGCTAAACCTCGACACAATGACGTGGCACGACTTGACAGAAGAAGACCAGCAGGGATCAGCTTCAGACGAACAGCTGGGTGAGCAGGAAGAAGGTAACGCACACTGCCCGAAAGCACGAGCCGGACACTGCGCAGTAACCGTCGGCACTCGTCTGTATGTCTGGAGCGGGCGAGACGGATACAAAAAGTCCCATAACTACCAGGTGTGCTGCAAAGATCTCTGGTACCTGGAAACAGAGAAGCCTTCGACCCCCGGCGCAGTGGTCCTTGTGAAGTCCACAATTAATATGCTGCATGTTGCCTGGAGGCCCCTACCTGCAGCTGAATGTTATTTGCTTCAGCTGCAGCCAATCACATCTCAGTCTGCTTCCACTGAACCACAGTCCACAGCATCGGACGCCGGGGACAGAAAGAAATCTCTACAAATAGACTCCCAGTCAAGTGCAGAAGTTAAAGAAGAGAAAGAATCTTCATCACAGaaaagcattttgatGCCAAAAGAACTAGATCAAGAAGGTGTTTCTGTGATGCCGTCAAACGTGAATAAGGCCGGTCGGCTGAATAGTACATCTCAGTGCCAGAAAGaacGAGATATTCCTCCGATACCATCCCAGCAGTCTGTGGACTCGGTGTGGTTTGATGTGGGtgtatttaaaacactgtaTTGTGAGGTTACACACTACTTCCTGCCTTCTGAGGAAGGTAACATGGCCTCAACTCTGTTTGGTCGAAACTCGTCTGGCATTGAGTGGGAGTTGCCAGGTCCTCATTGTTTTAAGGATCGCGAGAAGCGGGAACTGGCCTCAGGGGTCACATACAAGTTCAGGGTGGCCGGACTGAACAGCCGCGGCCCGGGCAACTTCAGTCCGGTCAGTGAGTTTAAAACCTGCCAGCCCGGGTTTCCTGGAGCGCCGTCTGCTGTAAAGATCACGAAGGATAAAGATTCGGTGCACATCACCTGGGAGCCTCCCACTTCTCCGTCGGGGAAGATCACGGAGTATTCCATGTATCTGGCTGTGAGGAAGAGTCGAGGGAACAGCGCGGAGAGACCTGGCGAGCTGGCCTTTATACGAATCTACCGTGGCACCAAGACCTCGTGCACAGTCAGCGAAAGCCAGCTGAGCAACGCACACATCGACTGCTCGGCGAGGCCTGCTGTCGTCTTCCGCATCGCTGCCAAGAACGAGCAGGGCTACGGCCCGGCCACTCAGATCCGCTGGCTGCAAGATGCGAGTAAACTGAAGTCCTCCGTGACGCAGGCCGTCTCCAGTCCTCCAGCAGCAGAGCCTGACACCACCTGCAGATGAACTCTCTCACCCCTGATGGGTCCACCGCCAAAGCTCGAATGCTTCAGGACTGCATTTCACTCTTTATTATTCCACAACTCCTTTTGCCGTtttaaacaaactcatctgttGACTGAACCGTTTTTCTCCTTTTAATGTCACGGTATCATTTCTACTGTAAGTTTTAGGTTTACCAGTATCAACTAAAAAGGTCatcactgtaaaatgtacatatttaacactttttatactgagtttatacatttatttttattatggattGTTGTAAccacttatttttgtttttccgaATTAAACTGCAtgtaaatttctttaaaatatgctatttttaagAACTCCGTAATTGACCGTAGTTGAAATATAAACAGCTTCACCAAAG

Function

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250582.1 lncRNA downstream 190587 3775440 ~ 3785720 (-) True LOC122342502
TU38219 lncRNA downstream 205978 3770121 ~ 3770329 (-) True G25739
TU38211 lncRNA downstream 234502 3710024 ~ 3741805 (-) True G25732
TU38209 lncRNA downstream 268413 3707589 ~ 3707894 (-) True G25731
TU38180 lncRNA downstream 275001 3699382 ~ 3701306 (-) True G25706
TU38397 lncRNA upstream 120902 4102730 ~ 4106259 (-) True G25853
TU38422 lncRNA upstream 179533 4161361 ~ 4161638 (-) False shank3b
TU38429 lncRNA upstream 194426 4176254 ~ 4176625 (-) True G25871
XR_006250551.1 lncRNA upstream 205139 4186967 ~ 4188728 (-) True LOC122342390
XR_006250562.1 lncRNA upstream 211731 4193559 ~ 4195145 (-) True LOC122342421
XM_043237753.1 mRNA downstream 5845 3931828 ~ 3970462 (-) False chst11
XM_043237752.1 mRNA downstream 5846 3931828 ~ 3970461 (-) True chst11
XM_043237762.1 mRNA downstream 67596 3906486 ~ 3908711 (-) True nopchap1
XM_043237726.1 mRNA downstream 88153 3826024 ~ 3888154 (-) True scube1
XM_043237751.1 mRNA upstream 3619 3985447 ~ 3988665 (-) True avpr1ab
XM_043237750.1 mRNA upstream 59064 4040892 ~ 4046291 (-) True kics2
XM_043237754.1 mRNA upstream 139614 4121442 ~ 4124829 (-) True si:ch73-139j3.4
XM_043237748.1 mRNA upstream 146312 4128140 ~ 4132867 (-) False LOC122343333
XM_043237749.1 mRNA upstream 146312 4128140 ~ 4132666 (-) True LOC122343333
TU38194 other downstream 372037 3602358 ~ 3604270 (-) False LOC122342823
TU38193 other downstream 374333 3601000 ~ 3601974 (-) False LOC122342822
TU38177 other downstream 399211 3548226 ~ 3577096 (-) False LOC122342819
TU38175 other downstream 428840 3534837 ~ 3547467 (-) False LOC122342819
TU38086 other downstream 954850 3021062 ~ 3021457 (-) False LOC122342805
TU38442 other upstream 283098 4264926 ~ 4267495 (-) True G25880
XR_006250792.1 other upstream 749396 4731224 ~ 4757827 (-) False LOC122343492
unassigned_transcript_302 other upstream 783025 4764853 ~ 4764940 (-) True trnay-gua
unassigned_transcript_303 other upstream 783252 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_305 other upstream 1735218 5717046 ~ 5717133 (-) True trnay-gua_3

Expression Profile