RNA id: XM_043237737.1


Basic Information

Item Value
RNA id XM_043237737.1
length 2550
RNA type mRNA
GC content 0.50
exon number 14
gene id lmf2b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4102778 ~ 4113721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCAATGAGCATCCGCGCTCGAGTCACCCGAAACAAGTGACACCTCATCTCTCCAGCGAGCCGCCAAGATGGGGGAAGTAAAAACGCCCAGACAATGGTTCTTGTGGAGCATTGCGCTTGTTTACGTGTGTGCTTTTTCATCCATCTACGTTCAAATACCAGGTTTGTATGGAGACGATGGTATTCTCCCTGTGCGCCTGCAGATGCCAAAAGTTCAGCGGCCCCTTCTGGAGCAGGAGTCCCTTCTTGGTCTGGGGCCATCTCTGGGTCTGTCACCCCAGCAGGTCCTGGAGCTCACATGCCTGGTCGGAGTGGCGCTGGCCCTGTGTGCTGTGCTGCTGGAGCCCCTGAGAGACAGTCTGATCTACTTCTGCCTGCGGGTCCTCTACCTCTCACTCTATAATgtCGGTGGAGACTTCCTCCGCTCTGAATGGGACGTGCTGCTGTTGGAGGCCGGGCTTCTGGCTGTGCTTGTTGCTCCGCTGAGTTTGCTGCGGCGTCACTCCTCTTACCGTTTTCATGACCCTGTGAGCTTCTGGTTGACCCGCTGGCTGTTCTTCCGGCTGATCTTCTGCACAGGTGTGAGTAAGCTGGCCAGCGGTGACCCTGCGTGGTACGACCTGTCAGCACTGAGTCATCATTTGGAGAACCAGATGAACCCCACTCCTTTGGCCTGGTACGTCCATCAGCTTCCTGATTGGCTTCTGAGATTCGGAGCAGTGATTGTGTTGCAGAGCGAGATCGTCATTCCTCTTGTGACGTTCTTTGCTCCCATTCGTCGCTTGAGGCTGTTCGGCTTTTATGTTCAGCTGTTTCTCCAGCTCTGCTACATCCTCACGGGTAACTGTAGCCTTCTGAACCTGCTGAGCATCGCCCTAAGCTTCTCATTACTGGATGATGATTATTTCCACTCTAATACTAGCCCAAAGAAGAAGAAGGGCCAGGAAAAAAAGTCCAGAAacTGCGGACAGACCTTGGTCTCTTTCTTGATGCTGCTGCTGGAGCTGGCTGTCTACCTGTTCATCCTCTACTGTTTTATTACTCTCTTTAAACTACAAGTTAACTGGGAAGAAAAAACTCTGTCATCCAAAACAAATTTCACTCAGCAGCGATTCCATGCGTTTCTGGAGGTTTTTCAGGAGCTCACTATCTGGATCGGTGTTCTGTCTTTCACCTGGGAAGCAGTGTCTGCCATGCTAAATTGCATGTGCAGCCGAGGTATTGTCAGCAAGCTCTGGTCTCTCATTCAGTGGGCGCTCATCACAGCAGTTACTGTGGTCGTCTTTGCTCTCAGTGTGGTTCCATACACATCCATGGCTGGCATGTCAATTAGTAAAGTATTACCTGCAGTTCGGGACGTGTACAGTGCTGTCGAGAGGTACCAGCTGGTCGGGGCATACGGCATCCAGCACAGAATGACCCCTGCTGAGGGCAGGCCTGAGATCGTTTTAGAGGGCAGCTATGATGGGCTGACATGGACGGAAATGAACTCTATGTATAAACCAGGAAATGTGAACGCAGTCCCACCCATAGTAGGCCCTCACCAGCCCCGGCTGGAGTGGCTGATGTGGCAGGCTGCTCAAGGAGGGGATGATACAAGCCCCTGGTTCACAGGCCTCTTACAGCGCCTCCTACAGGGCAAACCAGAGGTGGTTCGTCTGCTTCAGGTGGATGAAGCGCAGTACCCTTTCAGTCAGAAGCCACCAGTCTTTATCAAAGCCAAGCTTTATAACTACCACTTCACAGATCCTGCGAAGGACAAGACCCATCTGCAGTCTTGGTGGAGGCGGCAGTACAAAAAGGAGTTTTTTCCCATTGTGAACCTCGATGACCCGGCTCTCAAGAAACTCTTAGATGAGGCTGGACTGAAGGAGAAATCCCCCGGTCAGGCCAGCTCTGACACACCTGTATCGCAAGCTGTGAGCCTCATTCGAGAGCACGTCAAAGGCCTCTCGGGGTCCCTCGTGCTTTCAACGCTGTTAGCTACTTTAGCTGGAATCTTCCTCATCAAAGCTGTCTTAGGAAGCCGGAAACCTAGACCAGCACCAGCTGATCACAAGACTCGGAAACCCAAGGAGCCCTCTCAGACAGCTGAGAAAAGCCAAGCGACAGCTCCGTCCAACCGGGGCGGCAAGAAGGACTCCAGCGAAAAAAAGAACTCGGACAGAGAGTCCCCCCGAAAGAGGAAATGAGCTCTTACTGTCACTTTGTGCCTTTTGTCTTTGGCCATATGCAATGACAAATGATTCTCTCTcaggtgtattttttttttttctttctaagaTCAAATCTTTGAATTCCTGCCCGTCACACACCTCAGATTTGCGTGTCACCACTACCCCGTTTTATCTCTTCGTGTCAAAACCACTTGGTCAAATGCACAGTACTTTATGTAATTGGCTTTGAATGTTAACAGAGTCCATTTTTAAGCTGTCACCTGCAACACCCTTCTTTATACACAAGTGGACGTCCCAAAGATTACAACGAAAGCACAAATGCAATTTTTCATGCTATTTAACTCATTAAATGGTTGTTGATAAGTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250755.1 lncRNA upstream 95630 3988683 ~ 4007148 (+) True LOC122343346
XR_006250756.1 lncRNA upstream 294880 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 295216 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 393926 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 395714 3706859 ~ 3707064 (+) True G25536
TU38355 lncRNA downstream 15202 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 15618 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 16423 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 18387 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 110862 4224583 ~ 4227231 (+) True LOC122342475
XM_043237741.1 mRNA upstream 598 4098063 ~ 4102180 (+) True ovch1
XM_043237742.1 mRNA upstream 598 4098221 ~ 4102180 (+) False ovch1
XM_043237735.1 mRNA upstream 5507 4063857 ~ 4097271 (+) False tmtc1
XM_043237734.1 mRNA upstream 5507 4063858 ~ 4097271 (+) True tmtc1
XM_043237731.1 mRNA upstream 40731 4047051 ~ 4062047 (+) True ipo8
XM_043237757.1 mRNA downstream 1745 4115466 ~ 4121307 (+) True kitlgb
XM_043237763.1 mRNA downstream 11627 4125348 ~ 4126807 (+) True lsm8
XM_043237745.1 mRNA downstream 51016 4164737 ~ 4170689 (+) True hspa14
XM_043237764.1 mRNA downstream 61704 4175425 ~ 4176610 (+) True meig1
XM_043236162.1 mRNA downstream 63277 4176998 ~ 4180317 (+) True tmem243b
TU37969 other upstream 364184 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 600684 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 631643 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 655204 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 661278 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 115908 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 119187 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 436442 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 436442 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 815750 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile