RNA id: XM_043237744.1


Basic Information

Item Value
RNA id XM_043237744.1
length 2389
RNA type mRNA
GC content 0.51
exon number 11
gene id slc41a2b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3909143 ~ 3959260 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTTCGTGCGCTTCATCGCGCTCTCGTgggtcttttattttgaaacgcGTGCTCGCTCCCGCGGCAGTGATGACGCGCCGCCGCTGTCATAGAGCTCCAGTCCGGCGACAAGGGAAGAAGCAGAAAGTCGTCTCGACGGAACTAAAATAACACGGTCACTGCGATAATATCAAAGCTTCTTCATAGCTGTGGATGCCACCTGCTGTTTCTGCCGGTCTGCTGCTCTTCTCGAAGTCCAGTGGGCCATGAGCCCAACTAGTTTTTGTCTGCAGTATGAGCCTCCGAACCATCGGGGGCGCTGTGCTCAGCTCCCTGGGCCCTAGTCTGGCCGCACAGGCTGGAGGAGCCTGGAGCTCCATCTCTTTCAGACCCATACCGTCCTTGCTTCAGACCATGGTACCTGCTGGTTACACCGCACTACAGGAGGAACGGCTTGCCATGGTGGACCTCAGCACGCCCAAGCCAGAGTCCCTCAAGAACGGGTTCCACCGCGAGCCCCGCCGCCACTCGGACCGCGGCAGCCGGACCTCCATCAGCCTGTCTGATGCCGGAGACGGACGCTATGCGGAGACTGAGCCCATGCTGCCTGAGGGCAGGCTTTCAGGAGAAAAGCctgatgaggaagaggagagcgAAGAGGAAGGGCAGCAGCAGACAACTAGAAATATGCCCAAAGAGTCACCTCTCGCCATGGCATTGCAGATACTGGTGCCCTTTCTTCTAGCTGGGTTCGGGACGGTTTCAGCCGGAGTCGTCCTGGATATAGTACAGcattgggaagcatttaaaaacattacggAGATCTTCATCCTAGTTCCTGCTCTTTTGGGTTTGAAAGGAAACCTAGAGATGACCCTCGCTTCCAGGCTTTCCACAGCGGTGAATGTGGGGAAAATGGACTCGCCCATAGAGAAGTGGAATCTTATTATTGGGAATCTGGCACTGAAACAGGTGCAGGCCACAGTAATAGGGTTCCTGGCAGCAGTGGCAGCCGTTGTTCTGGGTTGGATTCCTGAAGGAAAGTTCCAGATCAGTCACGCCGTGTTGCTGTGTTCCAGTAGTGTCGCTACAGCCTTCATAGCGTCTCTGCTGCAGGGTATAATAATGGTGGGTGTGATAGTGGGCTCTAAGAAGACGGGCATCAACCCTGATAATGTAGCCACACCCATCGCTGCCAGTTTTGGTGACCTCATCACGCTGGCCATCCTTGCGTGGATCAGCCAGGGCCTCTACAACTGCCTAGATTCTCACCCATATGTGTCGTCTCTGGTGTGTGCCTTCTTCATGTGTCTGACACCGCTCTGGATGGTCATCTCTTCCAAACACCCTGCCAGCCGTCAGCTGCTCTACTCGGGCTGGGAGCCCGTTATCACTGCCATGTTCATCAGCAGTATTGGAGGACTTATCCTGGACAAAACTGTGTCTGATCCCAACCTGGCTGGTATTGTGGTTTACACGCCTGTTATCAACGGTATCGGAGGAAATCTGGTTGCCATCCAGTCCAGTCGGATATCCACCTACCTGCACTTTCATAGCACCCCTGGAGAGGTTCCTGATGAGGCCAAGGGTTGCTACTACCCCTGCCGTACTTTCTGTGGCACAGGGGCCAATCACAGGTCGGCACAAGTACTGCTGTTACTGGTCATCCCTGGTCATTTGATCTTCCTGTACACCATTGACCTGATGGAAAGAGGTCACACCTCACTGACGCCCGTCTTCATTGTCGTGTACTTGGCTGCTGCTCTGTTCCAGGTCATTGCGGACAGTTTTGTTAGGAAACGCACCATCTAACCACATCTGACAACACCACCGGGTGACATCAAGCTGCAAACCTGGCAGATGGCAGACGCTTGTTTATACCGGGGACCCTGGGAACTAAAATGATGGATACTTAAGCTCTTTGAAGCAAAAATTAGGTATCTGATAAACTCTCTAAAGTGTTTACGCACCATAAGTTTTAGAGAGCGCAGTGCATGAATGTGACCCTTTAATCAATATGCCTCTCTCCAAACATATCTGTCTCTCACCAGATTTGCTTGCCGACTATGTATACCTCCCATCCTAGTGGCtttttcagattaaaaatgAGGGAGAAACGcaataaattacttaaaatggGTGCTCAgaaaatagctttaaaatgtaaataaagctcTCAAAACTAGAGacagcaattaaaatgaaagcatctAACTGAGCTGTATAATGTTGTGGCATGTTAGAACTACATTGTGGTCCCCGTAGGCATTAAAAAGACTCTTGGGGGGGTTCAAATGCATTTAGCTTCCATTTAAGGATGTTctctcattaaaaatatctgcatTTTGTCTCCTTACTGCATGATGGATTTTGTTTCAGTGTGCATAGATGGCTACCGATGTAGtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250756.1 lncRNA upstream 101245 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 101581 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 200291 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 202079 3706859 ~ 3707064 (+) True G25536
TU37947 lncRNA upstream 206772 3701834 ~ 3702371 (+) True G25535
XR_006250755.1 lncRNA downstream 29423 3988683 ~ 4007148 (+) True LOC122343346
TU38355 lncRNA downstream 169663 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 170079 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 170884 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 172848 4132108 ~ 4132552 (+) True G25827
XM_043237733.1 mRNA upstream 3212 3897077 ~ 3905931 (+) True aldh1l2
XM_043237747.1 mRNA upstream 13268 3889437 ~ 3895875 (+) True samm50l
XM_043237555.1 mRNA upstream 139300 3760584 ~ 3769843 (+) True sult4a1
XM_043236806.1 mRNA upstream 207929 3678245 ~ 3701214 (+) True adipor2
XM_043237790.1 mRNA upstream 233850 3660617 ~ 3675293 (+) True LOC122343370
XM_043237758.1 mRNA downstream 13815 3973075 ~ 3975787 (+) False nfyba
XM_043237759.1 mRNA downstream 13965 3973225 ~ 3975787 (+) True nfyba
XM_043237723.1 mRNA downstream 49081 4008341 ~ 4039405 (+) True srgap1b
XM_043237724.1 mRNA downstream 49330 4008590 ~ 4039405 (+) False srgap1b
XM_043237725.1 mRNA downstream 49974 4009234 ~ 4039405 (+) False srgap1b
TU37969 other upstream 170549 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 407049 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 438008 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 461569 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 467643 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 270369 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 273648 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 590903 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 590903 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 970211 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile