RNA id: XM_043237745.1


Basic Information

Item Value
RNA id XM_043237745.1
length 2224
RNA type mRNA
GC content 0.47
exon number 14
gene id hspa14
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4164737 ~ 4170689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggctaaaaAAGCCGTCCGTCATTTGACAGCTCTTAGAAGTCCATCCTTCTCGTTTGCATATTAGTACCGGCTTCCGGTAGAATTCTTCGGAAGCATGGCTGCCATCGGGGTGCACTTTGGATACACATGTGCCTGTGTTGCCGTATTCAAGGATGGGCGAGCAGATGTTGTGGCGAATGATGCAGGGGACAGAGTCACTCCAGCTGTGGTCGCATACAGAGACACTGAACAGATAGTGGGAATCGCTGCTAAGCAGGGCAGAATACGAAATGCCACCAATACAGTTGTCAAAGTGAAGCAGATCCTGGGCAGACACTACGATGACCCAGATGCTCAGGCACACAAAGAAGAAAGCAAATGTGTTGTTGTCAATAAGAATGACCTGCCCAGATATGAAATCGACACAGGGGAAACAACCAAGTATGTGTCACCTGAAGATGTAGCTAAATTGATCTTCCATAAAATGAAAGAGACGGCCCAGTCAGCCTTGGGTTCGGATGTGAAAGACACTGTCATAACAGTGCCTTTTGAATTCGGAGAGATGCAGAAGAATGCACTCAGGCAGGCAGCGGAAAGTGCCGGGTTCAATGTGCTGAGGCTGATCCACGAACCTTCTGCTGCTCTTCTAGCTTATGGAGTCGGACAGGACTCACCGCTAGGAAAAAGTCATGTGCTGGTGTACAAACTCGGGGGCACGTCGCTCAGCGTCACCGTCCTGGAGGTGAACAGCGGAATGTACCGAGTCCTCGCCACACAGACGGATCACAGGACTGGAGGAGAGAGCTTCACACATGAGCTCGCACAGCACCTCGCCGCAGAGTTCAAAAAAACCTTTAAACAGGATGTGACGGGTAACCCCAGGGCGATGATAAAGCTCATGAATAGCGCTGATGTGGCCAAACACACTCTTTCCACCCTGGGCAGTGCAAACTGCTTTGTGGACTCGCTCTACGATGGCATGGATTTTGAGTGCAATGTGTCACGAGCCCGTTTTGAGCTAATATGCTCCAGTCTTTTTAATAAGAGCATTCAGCCAATTAAAAGTCTTCTTGAGCAAGTAAACCTGCCCACCTCTGACATCAACAAgGTGGTTTTATGTGGAGGATCAGCTCGTATCCCCAAGTTGCAGCAGATGATCAGGGATTTGTTCCCAGACGTGGAGCTGCTGAACTCCATCCCCCCGGATGAGGTTATTCCGGTCGGTGCTGCCATGCAGGCGGGCATCCTGGTGGGAAAAGACAGCCTGGCACTTGGAGAAGATTCCATCACTGTGGACTGCTGTGCCAGCGACATCACCGTTAAGGAAGTGGATGACTCCGGAATGGAGGTTTTCACGGTTTTGTTTCCATCTGGCACACCTCTCCCTGCCCGCCGCCAGCACACGCTGCAGGGTCCTGGCAGTCTGTCTTCAGTGAGTCTGGAGCTGTACCAGGCACAGCGACCAATTGCACAGATCGTACTTAGAGACTTGGAACCTAAAGAGGAGCTACATGATGTTGTCACAGTGCTGACAATGAAgagggatgGTTCACTGCATGTGACTTGCACAGAGCAGGGCAGCGGCAGATCTGAGGCCATTACCATAGAAATGGCTGCTGCAGCATCTTAACCTTAAATCACTCTGTCAACATAAATCCATACAGTAACCTAAACACCTGCATCCCACTGCTCTAAATTCCTCTAGACcttaactgaaacaaacaagTTCAAGTTCTTGTtcagttaaaggaatagctcacccagaAAGCTGTTATTCTCTTACCCTCATATTGTTCTAGAATTATTATACAACTTCTGCCATACAATAACCCATTCATGTCAAAAAGAGGAAACAAGTAGTTCTTTGTCATGAGTGggtgttttgtcttgttttatttttttaacagaagtCATCTTGTACTATTTTTCAAGCCTGCTGTCTGTGACCAGCAGGATTACTGTAGTTGTTATTACCATGTACTTGCATTACATTAGTGAAATTAATGTGACAAGCAAAACAACTGATACCATCTGAAACATGAACAACCTTATCAAACTGAAGAGAGACTTTCATATGTTGTATAGACTGAAGAGAAGCAGGTGCAGATGACTTGAGGATATGCTAATCTGGTGCAGTCACATCTAGCAGGTGCAaacaagtttttctttttttttttttaaaagctgttcTCCATATTTGTCAACTTTAACTAGTACACAATAAAGATCACAGTACACAATAAA

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38359 lncRNA upstream 32185 4132108 ~ 4132552 (+) True G25827
TU38357 lncRNA upstream 34315 4130144 ~ 4130422 (+) True G25825
TU38356 lncRNA upstream 35109 4129339 ~ 4129628 (+) True G25824
TU38355 lncRNA upstream 35487 4128923 ~ 4129250 (+) True G25823
XR_006250755.1 lncRNA upstream 157589 3988683 ~ 4007148 (+) True LOC122343346
XR_006250578.1 lncRNA downstream 53894 4224583 ~ 4227231 (+) True LOC122342475
TU38381 lncRNA downstream 82260 4252949 ~ 4253279 (+) True G25846
TU38457 lncRNA downstream 128978 4299667 ~ 4300306 (+) True G25892
TU38454 lncRNA downstream 152217 4322906 ~ 4323300 (+) True G25889
TU38501 lncRNA downstream 211486 4382175 ~ 4382506 (+) True G25927
XM_043237763.1 mRNA upstream 37930 4125348 ~ 4126807 (+) True lsm8
XM_043237757.1 mRNA upstream 43430 4115466 ~ 4121307 (+) True kitlgb
XM_043237737.1 mRNA upstream 51016 4102778 ~ 4113721 (+) True lmf2b
XM_043237741.1 mRNA upstream 62557 4098063 ~ 4102180 (+) True ovch1
XM_043237742.1 mRNA upstream 62557 4098221 ~ 4102180 (+) False ovch1
XM_043237764.1 mRNA downstream 4736 4175425 ~ 4176610 (+) True meig1
XM_043236162.1 mRNA downstream 6309 4176998 ~ 4180317 (+) True tmem243b
XM_043237894.1 mRNA downstream 244456 4415145 ~ 4429395 (+) True tspan12
XM_043237028.1 mRNA downstream 646359 4817048 ~ 4827652 (+) True adm2a
XM_043236167.1 mRNA downstream 661721 4832410 ~ 4840605 (+) False fbxo18
TU37969 other upstream 426143 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 662643 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 693602 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 717163 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 723237 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 58940 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 62219 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 379474 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 379474 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 758782 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile