RNA id: XM_043237763.1


Basic Information

Item Value
RNA id XM_043237763.1
length 607
RNA type mRNA
GC content 0.45
exon number 4
gene id lsm8
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4125348 ~ 4126807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCGATAGGTCGTCGACTGCACGAGTCTCGGCGTTCTCATTTCCGGTTCAGATCGCAGCTGAACAGTGTGTTTCGTTGTAGTTGTGCTCGAGAACCGGTGGATTTAAACACGCTCCAGCAGAGATGTCTACCGCTCTTGAGAGCTACATTAACCGGACGGTTGCCATCATCACTTCAGATGGCAGAATGATTGTGGGGACGCTAAAGGGCTTCGATCAGACGATCAATCTGATCCTGGATGAAAGCCACGAGCGGGTGTTCAGTTCTTCTCAGGGCGTAGAGCAGGTGGTTCTGGGACTGTATATTGTCAGAGGCGataatgtgGCTGTAATCGGTGAAATCGATGAAGAAACGGATTCAGCGCTGGATCTCGGAAACATAAGAGCAGAACCGCTTAATTCTGTGGCGCACTAATGCCTCTCGAATCAGGACTGAAAAAATCCACGTTTAGATGAAATTCCCTGTCTCCCTTTTGAAGACTCACCCTAGGACATCTACAGGCATCAAAAAGCAGCaatattatttgcttttttaatattgaaagaAATAGACTGAATGCATATCCTTTTTTTTACgtgtgttgaaataaaaaagaattggAAAGAA

Function

GO: NA

KEGG:

id description
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250755.1 lncRNA upstream 118200 3988683 ~ 4007148 (+) True LOC122343346
XR_006250756.1 lncRNA upstream 317450 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 317786 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 416496 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 418284 3706859 ~ 3707064 (+) True G25536
TU38355 lncRNA downstream 2116 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 2532 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 3337 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 5301 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 97776 4224583 ~ 4227231 (+) True LOC122342475
XM_043237757.1 mRNA upstream 4041 4115466 ~ 4121307 (+) True kitlgb
XM_043237737.1 mRNA upstream 11627 4102778 ~ 4113721 (+) True lmf2b
XM_043237741.1 mRNA upstream 23168 4098063 ~ 4102180 (+) True ovch1
XM_043237742.1 mRNA upstream 23168 4098221 ~ 4102180 (+) False ovch1
XM_043237735.1 mRNA upstream 28077 4063857 ~ 4097271 (+) False tmtc1
XM_043237745.1 mRNA downstream 37930 4164737 ~ 4170689 (+) True hspa14
XM_043237764.1 mRNA downstream 48618 4175425 ~ 4176610 (+) True meig1
XM_043236162.1 mRNA downstream 50191 4176998 ~ 4180317 (+) True tmem243b
XM_043237894.1 mRNA downstream 288338 4415145 ~ 4429395 (+) True tspan12
XM_043237028.1 mRNA downstream 690241 4817048 ~ 4827652 (+) True adm2a
TU37969 other upstream 386754 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 623254 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 654213 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 677774 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 683848 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 102822 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 106101 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 423356 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 423356 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 802664 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile