RNA id: XM_043237772.1


Basic Information

Item Value
RNA id XM_043237772.1
length 1318
RNA type mRNA
GC content 0.51
exon number 10
gene id krr1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 199811 ~ 205364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCACGCCGCCAGGTGGCGCTACGCGGGCAGGCTGCGTGCCCTCGTCACGACCAGGCGTAGCGTCTGACGTCACGCCTAACAGCAGCAATGGCGGCCCCCGGAGAAAGCACGAGTGAAACgccaaagaataaaaaacagaaaaagagcaaaaacacagatgaagCTGACCTGCTGACGGTCCCAGACGGCTGGAAGGAGCCCAAGTTCACCCCACAGGACAACCCCAAAGGTCTGCTGGAGGAGAGCAGTTTCGCCACACTTTTCCCCAAATACAGAGAGGCGTATCTGAAGGAGTGCTGGTCGCTGGTGCAGAAGGCTCTCGGAGATGTGTTTATCAATGCCACACTGGACCTGATTGAAGGCAGCATGACGGTGAACACAACGAAGAAAACATACGACCCCTATTCCATCCTCAGAGCCAGGGATCTCATCAAGTTATTGGCTAGAAGTGTGCCTTTTGAGCAGGCCGTGAGGATACTTGAAGATGACGTGGCATGCGACATTATTAAAATCGGGACTCTTGTGCGAAAAAGAGAGCGTTTTGTGAAGAGACGACAGAGACTGATCGGCCCCAAGGGCTCCACGCTGAAGGCTCTAGAGCTGCTGACCAGCTGTTACGTGATGGTTCAGGGAAACACGGTGTCTGCCGTCGGCCCGTACAACGGCCTCAAGGAGGTACGCAAAGTGGTGCTGGACACAATGAAGAATATTCACCCTATTTACAACATAAAGACGCTGATGATCAAGCGAGAGCTGGCGAACGACCCGGAGCTGCGCACTCAGAGCTGGGAGAGATTCCTGCCCAACTTCAGACACAAGAGTCTCTCCAAACGCAAGCAGCCCAAGAAGAAGACGCTGAAGAAGCAGTACACCCCGTTCCCTCCGCCGCAGCCCGATAGCAAGATTGATAAGGAGCTGGCGACCGGCGAGTTCTTCCTGCGAGAGAGCGAGAAGAGACGCAAGAAGATGAGTGAAATTAAGGCCAAACAGACGGAAGCTTTATCAAAGAGACAAGAGCAGCGGCAGAAAGCTTTCATTCCTCCTAAAGAGAAGACGACCGTGAAGAAGAAGAGCAGACCAGGTACAGCAGCAACAGCAGAAAACAAAATCGATATTCAAGCCattaaagaaaaagtaaagaaagcCAAAAGTAAAAAGCTCGGCGCTCCTCCAGTAAACCCCGAGACCCCTTCAGTGAAAGACGGCAAGCTGAAGAAAGTGAAGAGCTAGCGCTCGGACTCATCAGACTAACCCCGCTCTGATACTCTCTTCATTACTCAGtgtgtttctataaaatatgttgttttcatTACAAAA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36788 lncRNA downstream 5652 191396 ~ 194159 (-) True G24713
TU36787 lncRNA upstream 529 205893 ~ 208820 (-) True G24712
TU36801 lncRNA upstream 7241 212605 ~ 213099 (-) False G24724
TU36802 lncRNA upstream 7241 212605 ~ 213149 (-) False G24724
TU36803 lncRNA upstream 7241 212605 ~ 213246 (-) True G24724
TU36792 lncRNA upstream 74634 279998 ~ 281987 (-) False osbpl8
XM_043236794.1 mRNA downstream 15381 177273 ~ 184430 (-) True ccdc107
XM_043236159.1 mRNA downstream 28477 136003 ~ 171334 (-) True kcnc2
XM_043236160.1 mRNA downstream 28477 138800 ~ 171334 (-) False kcnc2
XM_043236161.1 mRNA downstream 28477 141594 ~ 171334 (-) False kcnc2
XM_043237975.1 mRNA downstream 113201 75381 ~ 86610 (-) True cpsf6
XM_043237830.1 mRNA upstream 44777 250141 ~ 252421 (-) True phlda1
XM_043236959.1 mRNA upstream 47902 253266 ~ 267765 (-) True nap1l1
XM_043236958.1 mRNA upstream 47902 253266 ~ 267764 (-) False nap1l1
XM_043236957.1 mRNA upstream 47902 253266 ~ 267764 (-) False nap1l1
XM_043236595.1 mRNA upstream 76357 281721 ~ 341953 (-) False osbpl8
TU36783 other downstream 8569 186460 ~ 191242 (-) True G24708
TU36763 other downstream 126325 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 165895 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 188710 10833 ~ 11101 (-) True G24689
TU36940 other upstream 703582 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 863796 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 1403996 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 1403996 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 1448227 1653591 ~ 1654807 (-) False ccdc167

Expression Profile