RNA id: XM_043237775.1


Basic Information

Item Value
RNA id XM_043237775.1
length 2571
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC122343357
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 205505 ~ 213159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCCCGTTATGTATTTAAATCAGGCATATTTCCAAACACACTTCCGACAGTGAAATCTCTGTGTGGGATATGTAATTGTTGCAATATttctataaacaaaaataataaaatacatgtttgcGTAAAAGTAGAAATGGACTATAAATACGCATAGCAAGCACTTCAAGTGTGTTgttcatcatatttttattcctaTTAAAGCAATAGAAATGAATTTATGTCACGTTTGTCAGCAGCACAGCATAAGAGAGACAATACTATACTAACAATACTAATATGAACATAActtgaaatgtttaattagatttgttagcaaaattatattaaaaataactataatattgtatttttgattgacTAGCTTATTGACAATTATCATTTCTtggatgttttttaattattatttgatcttattttaaTGACTGCTACACACTGAAGGGAGTTACTGTCATCATAGTGTCATGACTTActaataatattagaaatattagcAGCATAATAGAGCGGTCTCACATAAATCAGAAATGATTCAGTAAGTTTGGGTCTAAGAGGGCAAAGCACTGATTCTAGTAGTATCAAGAGCGAGGGAATGTAtgtgatttaattttgtaaagCACAGACAGTCTGTTTGTCATTACACACCGCTTAATAAGAGTCACAAGTGCTGAAGCGGCTCAGACTCAGCCGCTGTTCTTCCTCGCATCGTATCCATCCCGACCGGAGCGAAGTCGAGATgcgtgttttgtgtgtgtttgcggtggtgtgtgtgttcgcCGGATCAGCTTCAGAAGATCAGAAGGAGCTGGCAGCGGTCCTGCGGAGCGTGTCTCCGGCCCGGCCGTCCTCGGGGCCCCAGGCCGCCGCCGCCGGACCCAGACTGCTGACTAAAGACGGCCTCGTCCAGGGCCTGGCGCTGGACAAGTGCTATGTGTTTTATGGGATCCCGTTCGCCGGTGCTCCTGTGGGGGAGTCCCGCTGGAAGCCGCCCCGTCCCGTCACGCCCTGGAGAGGGGTGTATGACGCCAGCTATCCCCGAGCGGCCTGCATGCAGGCCTGTGTCGGACCCATCGCTGACGACTGTCCCAAGAAGGTGAGTGAAGATTGTTTGTACCTGAACATCTTCGTTCCTCTGAGCGTGGACCTCGAGGCCCCGCTGCTGACGCCACTTCCGGTGATGCTGTGGCTCCACGGCGGGGATTTCATCGCGGGCTCCGCCTCCAAACCGCTCTACGACGGCCGTTACATCAGCAACTTCACGACGACGCTGGTCGTGAGCGCCGCCTACCGCCTGGGTGCCTTCGGCTTTCTGGTGTCAGGAAAAGACCCGCGGACTTCCGCCGCGGGGAATTATGGGATTCTGGACCAGCAGGCGGCGCTGCTCTGGGTTCAGCAGAACATCGCGGTGTTTGGAGGAGACCCGAGCAGGgtgACTCTGTTTGGAGAGAGCGGAGCTCAGTCAGTCGCTCTTCATCTGATGATCCAGAGCAGTAAACCTCTCTTCAGACAGGCCGTCTTCCAGAGTTTACCCTTCTCCATCCCTCTGAAGACAcgGCACGAGTCTTTGAAGCTCGGGAAGAACTTCGCTAAATCAGCCAACTGCTCGGTTCTGGACCTGCCGTGTCTTCAGTCTCTGAGTCCTCGAGAGGTTCTGGACGCACAGATCCGGTCCAGCTCAAAGGTGGTGAACCCCTTCCGCTTCCTGGAGCAGTTTGAGAGCTGGGGGCCGTTTGTGGACGGAGAGCTGATCCGAGAGCAGGCGGTCAGCGCCTTCCTGAAGGGACACTGGCAGAAGGACAAGCCCGTGCTGCTCGGGACCACCTCGGAGGAAGGCGTGATCTTTGTGTACGGCGTCTTCACGAAGGCCGTGTCTGCGGTCGAGAGCACCGTCTACACCACGGCCATCTTCAAACAACACGCCATCAAGATCCTGCGCAAGTACCTGCCGCTGTACGGCGCCGCTGACCGCAGGGACATGCTAGCACAGATTGTGACGGACTACATCTTCCTGTGCCCCTCGCGGAGGTCTGCGCGCGCCGCCGCGGCCTCCGGTAGCTCGGTGTGGATGTACGTGTTCGATCACGCGCCGAGCGACCCGGGCTTGTGGTCGGGCCTGACGTTCTGTTACCGTCACGCGTGTCACGGCGCGGAGCTGCCCTTCGTGTTCGACTCGGCGCCGGCGGCGAATCTCAGCATGACTCCGGCGGAGCGGCTGCTGTCCGACCGGACGCTGTGTTACTGGGGCTCGTTCGCTCACGCCGGAGAGCCCGGAGCTCACGCGGACTCCAGCGCGTTCTGCCGGCGGCGGCGTCCTCCGGCCTGGCCGCGCTACACGGCTGACAGCGGCTGGCTGGTCCTGAACCTCACGCTACATTCACACGCGCAGAGCGGATCACGGGACGGCATCTGCGACTTCTGGGACGCGCTGGGAATATATCCGTGAGAAGAAACCGACGAGATCGTTCATTCCTCAACggactgtatttgtgttttgtttttaagtgcaAGCGACTGAAGAGTgaacgattaatcgcgattaatcgcgtccaaaataaacgtgtttgttcacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36599 lncRNA upstream 11322 191392 ~ 194183 (+) True cmah
TU36595 lncRNA upstream 88614 116199 ~ 116891 (+) True G24567
TU36576 lncRNA upstream 118917 85235 ~ 86588 (+) True G24554
TU36574 lncRNA upstream 122982 75388 ~ 82523 (+) False G24553
TU36619 lncRNA downstream 2816 215975 ~ 281984 (+) False G24586
TU36621 lncRNA downstream 29407 242566 ~ 282841 (+) True G24587
TU36627 lncRNA downstream 37013 250172 ~ 252374 (+) True G24593
TU36628 lncRNA downstream 40106 253265 ~ 255853 (+) True G24594
TU36629 lncRNA downstream 40106 253265 ~ 315566 (+) False G24594
XM_043237774.1 mRNA upstream 5969 195092 ~ 199536 (+) True glipr1a
XM_043236793.1 mRNA upstream 12022 184716 ~ 193483 (+) False cmah
XM_043237828.1 mRNA upstream 98200 90208 ~ 107305 (+) True frs2a
XM_043236240.1 mRNA upstream 116353 87004 ~ 89152 (+) False yeats4
XM_043236781.1 mRNA downstream 130433 343592 ~ 360922 (+) True zdhhc17
XM_043236911.1 mRNA downstream 221184 434343 ~ 439352 (+) True gpr22a
XM_043236912.1 mRNA downstream 221184 434343 ~ 439352 (+) False gpr22a
XM_043236913.1 mRNA downstream 224024 437183 ~ 439352 (+) False gpr22a
XM_043236972.1 mRNA downstream 647437 860596 ~ 863551 (+) True LOC122342832
TU36577 other upstream 120543 83688 ~ 84962 (+) True G24555
TU36656 other downstream 80076 293235 ~ 295069 (+) True G24609
TU36680 other downstream 160368 373527 ~ 373824 (+) False G24632
TU36683 other downstream 160368 373527 ~ 374082 (+) True G24632
TU36860 other downstream 440933 654092 ~ 665530 (+) True G24771
TU37077 other downstream 1075153 1288312 ~ 1291224 (+) True ndufa5

Expression Profile