RNA id: XM_043237779.1


Basic Information

Item Value
RNA id XM_043237779.1
length 1911
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122343360
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1805589 ~ 1808700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTACATTAATATGCATACTCAATGTGAATAATATATCATATCTAACATATTTCTAGCTGCTATGCTGTGGTTCATGCAACTATTTCTGCTTCCGGGTTTTACAACTCCCACTAGTGCAGACCAAATCAGACTGATTAATGGCATCAACTCTTGTTCTGGACGAGTGGAGGTTCTTTATAATGAAATATGGGGAACCGTGTGTGATGATGGCTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGATGGGATGTGGAGATGCTATAGAGGCAAAGAGCGCTGCTTATTTTGGCCCAGGATCAGGACAGATATGGATGGATGATGTAAACTGCACTGGTACTGAGTCTTCACTGATGAATTGTACGACACGTGGATGGGGAAAACATAACTGCCAACATTCCCATGATTCTGGAGTCATTTGTAACACAACTGTCAGGTTGGTGAATGGAGATGACAAGTGTTCTGGACGAGTGGAGGTTCTCCGTGAGGGTCAGTGGAAAACCGTGTGTGGTGATGACTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGATGGGCTGTGGGGGTGTCGTATATGCAAGTCGTGCCTTTTTTTACCAAGTACCAGGACAAATGTGGACGAAAAGTGTACAATGTACCGGGAGTGAATCTACATTGAAGAGCTGCAGAGCACAAGAAATGGCCTCCTGTAGTAGTAATAAAGCTGCTGGAGTCCTCTGCCAGCTTCCTGTCACACTGGTCAATGGCACTCATTCATGTTCTGGACTAGTGGAGGTCCGACACAATGGAATATGGGGAACAGTGTGTGGTGACGGCTGGGATCTAAAAGACGCCGCAGTGGTGTGTAGAGAGATGGGATGTGGAGATGCTATAGAGGCAAAGAGTCAAGCTTCTTTTGAACCAGGATCACAGCCGGTATGGATGAACAATGTGAGCTGTAATGGAACAGAGTCTACACTGAAGGACTGTGCGTTAAGCGGAAGAGTTCGACAAAACTGCAGCAATAAAAACTATGCTGGTGTTATCTGTGGACCCAAACTTCGACTGCAGAACGGTTCCAGCTCTTGTTCTGGACGAGTGGAGGTTCTTCATAATGGAACATGGGGAACAGTGTGTGATGATGACTGGGACATAAAAGACGCTGCAGTGGTGTGTAGAGAGATGGGATGTGGAGATGCTATAGAGGCAAAAAAAGGTGCGTTTTTTGGCACTGGTTCAGGACCAATATGGATGAATAATGTAAATTGCAATGGGAATGAGCTAGCTCTGAGGAAATGTAGATCATCTGGATGGGACGTACAGACCTGCAATCATATGGATGCTGGAGTCATCTGCCAATACAGCTACACCTATATCAACGATTCAAAAAGCTGGATTGATGCACTAGAATACTGCAGAACTCGTCACCAGACACTGGCGCACGTTTTAAATGCCATGGCACATGACTACATCACACAGATGCTGCAGGATAAAGGAGTCACTGATGGAGTGTGGATCGGGCTTGAGAGGAGTATGCTCTTCACTTGTTCACCCTGGCTGTGGACCGGTGGGTCGTATGTGGAGTATGCATTGTGGCATCAAGACTATCCAAAAGACCAAGAGACCATGTTTTGTGGAAAACTTTTTAAGAAGGAACAGAACGGGTTTGGATGGATTGATGCTTGCTGCCATGAGCGCCTGCCTTTCATCTGTCAGGATTGAAACACTAGGTGGAGCTGTATCCTTGTTTGAATCAGTTGGTGAAAAGCTATAGTAATGTGTAGCCCTGTGTGTTGGTATGTACTTGTATAAGATACtattaaaaaatctatatgaaatgtattttaaaattcacatgAAAATGCTCATCTTCTTTTCTGAGTTTATACTGAAATGATTTATGTGACTAATGAATCTTTAAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37231 lncRNA upstream 16554 1788631 ~ 1789276 (+) True G25030
XR_006250569.1 lncRNA upstream 18596 1784237 ~ 1787234 (+) False LOC122342451
TU37284 lncRNA upstream 112441 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 133070 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 248052 1556392 ~ 1557778 (+) True G24968
TU37306 lncRNA downstream 21978 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 91196 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 97130 1905830 ~ 1906106 (+) True G25192
TU37451 lncRNA downstream 98500 1907200 ~ 1908927 (+) True G25193
TU37517 lncRNA downstream 185608 1994308 ~ 1995523 (+) False lyrm5a
XM_043237780.1 mRNA upstream 1264 1800486 ~ 1804566 (+) True LOC122343361
XM_043236919.1 mRNA upstream 7938 1792307 ~ 1797892 (+) True si:dkey-14d8.21
XM_043237557.1 mRNA upstream 22147 1762190 ~ 1783683 (+) False strip2
XM_043237781.1 mRNA downstream 592 1809292 ~ 1816478 (+) True mapk11
XM_043236242.1 mRNA downstream 9323 1818023 ~ 1822750 (+) True mapk12b
XM_043236337.1 mRNA downstream 14935 1823635 ~ 1825062 (+) True LOC122342504
XM_043236175.1 mRNA downstream 87461 1896161 ~ 1898257 (+) True mrps18a
XM_043236186.1 mRNA downstream 132042 1940742 ~ 1945597 (+) True pou3f2a
TU37230 other upstream 17734 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 132871 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 514606 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1140300 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1431748 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1306808 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1310829 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1630431 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1632212 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1638358 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile