RNA id: XM_043237780.1


Basic Information

Item Value
RNA id XM_043237780.1
length 2809
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122343361
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1800486 ~ 1804566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAACATGTCAGATGTTACAGCTTGACCATCCAGCAGAAGCCACAAGATGAAGCTAAAATGCTTTGTGTGAAAATTCAATAAACCGACAATAAACCGAGGAGTATTTCATATCCAATATCATACGAAATATCACAATATGTTGTGGTCCGTTCAACTCTTTCTGCTTTTTGGCTCCATAACTGTCACCAGTGGAATCAGATTGGTCAATGGAGACTCTTGTTCTGGACGAGTGGAGGTTCTTCATGACGGTCAGTGGGGAACCGTGTGTGATGATGACTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGATGGGCTGTGGGAACGCTATAGAGGCAAAGAGTGCTGCTTATTTTGGACAAGGATCAGGACCAATATTGTTAGATGATGTAAATTGCGCTGGCACTGAATCCTCACTGATGAACTGCAGGACAAATGGATGGGGCATCAATGACTGTGGACATCATGAAGATGCTGGAGTCATCTGCAACACTGTTCGGTTGGTGAATGGCATCAACTCTTGTTCTGGACGAGTGGAGGTTCTTCACAATGGAATATGGGGAACAGTGTGTGATGACGGCTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGACGGGCTGTGGAGATGTGATCGAGGCCAAGAGTCAAGCTTATTTTGGACCAGGATCAGGACAGATATGGATGGATGATGTACTATGTACTGGAAATGAATTTACTCTGAAAAGCTGTTCTTCAAATGCATGGGGAATACACAACTGTAACCATCAAGAAGATGCTGGAGTCATCTGTCTGACTGTCAGGTTGGTGAATGGAGATGACAAGTGTTCTGGACGAGTGGAGGTTCTCCGTGGAGATCAGTGGGGAACAGTGTGTGATGATGGCTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGGAAGGTGATCGAAGCTAAGATTGAAGCTTTTTTTGGACAAGGAACGGGACCAATGTGGATGGATGATGTAAATTGTGCTGGCACTGAATCCTCACTGATGAACTGCAGGACGAGCGGAATAAATGACTGCAGCCATTTTGAAGATGCTGGAGTCATCTGCAGCTCTGTCAGGTTAGTGAATGGCAATGACATTTGTTCTGGACGAGTGGAGGTTCTTCATAATGGAACATGGGGAACCGTGTGTGATGACGGCTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGACGGGATGTGGAGATGCTACAGAGGCAAAGAGCGCTGCTTATTTTGGACCAGGATCAGGACAGATATGGATGGATGATGTACAGTGTATAGGAAATGAATCCAAACTGAAAAACTGTTCTTCAAACGGATGGGGAATAAACAACTGTAGCCATCAACAAGATGCTGGAGTCACTTGTAAAAaaatcagaaaaaaaacagtcatgaGGCTTCAATTTAACATTGATCCAAAAACTGACCTAAATAGTGAAAGAAAACAGATGGAGACTTTGGAGAAGataaGAGAGGAATTAAAAGATTCTGGGACTTTTATCCTGCGATGGAAGACACAATCTAATGGAGAAGTGTTTCAGGAATTTgggaaaaagaataaaaatccTTTATATTGTAAGAAAAACCTATAAAGCCTTTGTTTGCTGCTATATATTTGGATTAATGTGTGATAGTATTACACTGATACATAAATAACTGATTTCATGTTTGACTACAAGTAAATCTGACACTGCAATTAATTGTATAAAGTGACTGATTTAAGTACAAAACATATACATTAccatttaatattcataagagTGTGAACTGCATTTTATATACTAATCTAAAAAACTAAGATGGtgacaatgttttattaaattgcatttacttCCTGTTGTTGCTGATTATagtaaaatggtaataaatgcaaaactgatgtaACGCATTTGTTAATGCaacctgtctctgtctgtgaaaacccatagatacgAAGCTGCATATCTAATGCTAATTTTCAAAGCTATCagttttcaaaatgttcatattaaaatcataacatAAAGTCATAACATAATATTCTTCAGGTAATGTTATGAAAATTccgctttattaatcaaaaccttaaacttgtgtgaaaaggaagaaaaggtgtcagagttttccTTCCTCTATGTTCGTTTGgtttgaaaactgcagtgatacgCACTCATCGGTACGCATTCTGCATCTTGCCAAAAAAGTAGTGCAAAAGAAATGCAAGGTTGTCTATTCCACCAGTGCAGCAGTCTCAGGTTTACTTACTGGCTCAAATTACTCATATAACCACATTGTTCAGCACAATGAAACATACAGTATTGTCTTCAAATGCTCATTTAGCATCTCCTTTGGCCCTAAACATGGACCGACTCTTAGGAGTCCCTAAGCACTCCAGAGAACATCCGGTCACTACACACGTGATCACAGTAAGCCTGAAGATGATGTATTCCTCATTAAAGCATCGCTTTGACATGGACACCTGGACGCAAAGCCTCCCATCTGCTGAAGAAGGACAAACCCTCGTAGTTAAGATGCAAAAACTCCTATCAGAAAGTGGCTTTAAATTGAGGCAGTGGGCCAGTAACAACTCTGGTTGGGGAATCCTGTATCTAATTTTAGTCATCTTCTCACTCTGGCTCAAGCCAAATTAATTAAAGTGCAGATGTGATCACATGGACTTGTCTTAAATATTGTCTTTAATTCGGCTAATTTACAAAGCTTCCGATTCAACATTACGGCCGTCTCCTCTTCCAGAACCTGAGTGTGTTTTTGCAGAACTGATGGCTGGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37231 lncRNA upstream 11210 1788631 ~ 1789276 (+) True G25030
XR_006250569.1 lncRNA upstream 13252 1784237 ~ 1787234 (+) False LOC122342451
TU37284 lncRNA upstream 107097 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 127726 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 242708 1556392 ~ 1557778 (+) True G24968
TU37306 lncRNA downstream 26112 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 95330 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 101264 1905830 ~ 1906106 (+) True G25192
TU37451 lncRNA downstream 102634 1907200 ~ 1908927 (+) True G25193
TU37517 lncRNA downstream 189742 1994308 ~ 1995523 (+) False lyrm5a
XM_043236919.1 mRNA upstream 2594 1792307 ~ 1797892 (+) True si:dkey-14d8.21
XM_043237556.1 mRNA upstream 16803 1762189 ~ 1783683 (+) True strip2
XM_043237557.1 mRNA upstream 16803 1762190 ~ 1783683 (+) False strip2
XM_043237559.1 mRNA upstream 16803 1762245 ~ 1783683 (+) False strip2
XM_043237560.1 mRNA upstream 16803 1769289 ~ 1783683 (+) False strip2
XM_043237778.1 mRNA downstream 1023 1805589 ~ 1808700 (+) True LOC122343360
XM_043237779.1 mRNA downstream 1264 1805830 ~ 1808700 (+) False LOC122343360
XM_043237781.1 mRNA downstream 4726 1809292 ~ 1816478 (+) True mapk11
XM_043236242.1 mRNA downstream 13457 1818023 ~ 1822750 (+) True mapk12b
XM_043236337.1 mRNA downstream 19069 1823635 ~ 1825062 (+) True LOC122342504
TU37230 other upstream 12390 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 127527 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 509262 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1134956 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1426404 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1310942 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1314963 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1634565 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1636346 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1642492 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile