RNA id: XM_043237787.1


Basic Information

Item Value
RNA id XM_043237787.1
length 3332
RNA type mRNA
GC content 0.47
exon number 25
gene id ppfibp1a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5009871 ~ 5023591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGCACAACTCTCAACTTGAAGTCCGAAAGTTCTGCCGCTGCTCAGAGGAGACGCGTTCAACTGCATtagaaaacattaatatgaggGACGCTCGGGAATATCTGATGATTTCGGACACGCACGTCTGCTGAAGCCAgtttatcatttcaaataacGTTAGGACTCACGTTACATTAGAAGGTTTCAAGAAAGCTGATCATGATGTGTGATGCGAGTGAAATGTTAGCAGCTGCTCTGGAGCAGATGGATGGCATCATTGCAGGTTCGAAGGCTATGAACTACACCAATGGCCTCTTTGATTGTCAGTCACCAACTTCACCATTCCTGGGCAGCCTTCGGGTGCTGCACCTCTTGGAGGACCTGAGAGCTGCTTTGGACTTGATGGATCCTGAGGAAAAGGAGAGTTTGCGCAGTCAGGTGTCCGAAACTGCAGCTGAGGGTCTGGTGGAGTGGCTACAAAGCCGCCTGACCAATGGCCATGGATCTGCAGCAGGGGATTTAGTCTACCAAGAGCGACTCTCTCGCTTGGAAAGTGACAAAGAATGTCTAGTGCTCCAGGTAAGTGTTCTGACAGACCAGGTGGAAGTTCAAGGAGAAAAAATAAGAGACCTAGACTCGAGCCTTGAGGAACATCGCATGAAACTGAATGCCACAGAAGAGTTACTACAGCAGGAGCTGCTTAGCAGAAGTGCATTAGAGAAGGAGAAACTGGAATTGCTGACTGAGGTATCAAGTCTGAAACTAAAGCTAGCTGCTGCAGAGGGGGATTGCAGAGAAAGTGAGGGTCTTTATCAGGATGTGAAAAGCATGCGTCTTCAGTTGACTTCTATGGAGGATGAGAGACAAGCGTATGAGAGAAGTCTTAACTCTACCAAAGAGGAGTTGATATCACTACAAAAGCTGTTGGAGGAGAGAGAACAGGCACTTGGAAGACTTCAGGACCAGGCCATGTTAGAAGCCCCAAACACGGAACAGGcacaaaacagagagaaagACATGGAGGTGCAAAGAATGAAGAGCGCTGTTGAGATTTTGAAGGCAGCTAATGAAGAGAAGGATTTGAAGATAAACGAGCTGCAGCAGTCTCTGATCCGTTTCAAGCGAGTGCAGGATATGGTGCTGTCCGTGCAGGCAGCAAAAGACAAACCCAGGGATGAAGACACAAGAGAAGGGCTGTGTGACACCGAGATGGTCTCCACAGGAGGCACAGAGGAAACTGATGAACCTCAGCTCATTCCATGTTCAGAGCTGCTCCCAGAAGTGACCGCACACAAACCTGCAGCAGAGACCGCTGAAAGtgcctctgaagtACAGCAGCCTGAAAGGATTCGTTTGACAAGCAATAATGAGGATGTCACCAGTAAAAATGGGGGCTCTCCATCCGTCTCCCCGAGTTTTGGCTCTAAAAAAGCACGTTCTTCTTTCGGACGTGGCTTTTTCAAGATCAGAGGCAACAAGATGACAAGCACCGCTCCCAATCTGATTGAAGGAGAGCGTAAGGGGACTGAGCACTTGGATTTGGCTGGAGTGCAAACTCAGAAGCCTAAGACATCAGAAACCCATTCGCCTGAAGGGAAGAAGAAATCAAAGGGGATCATGAAGTTATTTGGAAGAATGAAGAGAAGTCAGTCCACCTCCGATAACCTGGACGACTCTCCAGATTCAGCATTTAGAAGAGGTGGCGTGCGAGCCACAGCGGGACCCAGACTTGGCTGGTCACGTGATGTGCCACGAAGCAATAACAAGTACATAggTGAGCAGGACAGCCCGTTTTCACGCTGGAGTAAAGCGCAGGTGTGTGAGTGGCTGCAGAACCAGGGACTGGACTTGTATGTAAATCAGGCTCAGCAGTGGATCAGCTCTGGACAGACCTTATTGAAGGCATCTCAGCATGATTTGGAAAAGGAAATGGGCATCAGGCATCCTCTACATAGAAAGAAACTGCATCTGGCTCTTCAGTCGCTGGGCTCTGAGGAGGAAGATGCCATGGGGAAACTGGACTACAACTGGGTTACTCGATGGCTGGATGACATCGGCTTACCTcagtataaatctcagtttgatGAGGGCAGAGTGGATGGACGCGTGCTTCACTATATGACTGTGGATGACCTGTTGGGACTGAAAGTGGGCAGTGTGCTTCACCATCTCAGTATTAAGAGGGCCATTCAGGTGCTACGTATCAACTGCTATGACCCCAGCTGCCTCCGTCGCCGACCAACAGAGAATAATCCCACTCCAGCAGAAATCTGTCAATGGACCAATCACAGAGTGATGGAGTGGCTCCGTTCAGTGGATCTGGCGGAGTATGCACCCAACCTGAGAGGAAGTGGAGTCCATGGAGGCCTAATGGTTTTAGAGCCTCGCTTCAATGTTGAGACGATGGCCCTGCTTCTTAACATCCCACCAAATAAAACTCTGTTGAGACGTCACCTTGCAACCAACTTCCATCTTCTGATTGGCTCAGAGGCACAAAAACTGAAGCAGGAATATCTCGAAAACCCAGATTACGCTGTTCTGACGGCTACAGCCAAAGTTAAGCCAAGACGACTGTCGTTCGGAAGTTTCGGGACATTGCGGCGGAAGCGACAGGAGGAGACGGAAGAGTATGTTTGCCCCATGGATGTGCAGATGCCTCAGAGCAGCAGTTTCCATAAAGGCCTTTGCGCATATGAGGACAGCTTGGATCAGCTGGAGCAGATGGAAGACTCTGAAGGCACAGTGCGACAGATTGGTGCATTCTCAGAAGGAATCAACAACCTGACTAGCATGCTAAAAGATGATGAGTTCTTCATGGAAGCGTCGTCCCCTTCACCTGAAACCAGCACTATAGATGACGATTAAGACAGTTTGAACATTGACAATAAGTCTGTAGCTGTGAAATTAGTTTTAACTATGAATGCAATAAGCTCCACTCACAGTGAAActcaaaaacattacacaatAAACGCAATAGTATATTGATTCAatgaaatgctatttattcAATTAGGATCTACAGTATCTACAGTAACTGAAACAGTATTTGTAAGCGTTTGCACCAAGCTAAAAACCAAAGACGACAAATCAAAGCAgcagttagtttttttttttgggggggttctTTCTTTTATACCCTAGGTTATTCTTACGTGACTGTTTGCTGCATGTTTTCATCACTTTCTAGTTGGATGTTTACGTAATTTTATTGGGAGGGAAAATTATTTTTGCCTGCAAACTCTTGATATTGTTATACTATAACTATATCAGTGAATACCATGTACTATGTACTGTTTTATGCATGTGCAAGTCAaagaaatgcaattaaaactatttttttctgagtctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38793 lncRNA downstream 873 5008626 ~ 5008998 (-) True G26121
TU38776 lncRNA downstream 63810 4944128 ~ 4946061 (-) True G26109
TU38757 lncRNA downstream 81166 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA downstream 81166 4920806 ~ 4928705 (-) True G26100
TU38756 lncRNA downstream 82254 4920573 ~ 4927617 (-) False G26100
TU38905 lncRNA upstream 62246 5085836 ~ 5086939 (-) False LOC122343483
TU38906 lncRNA upstream 70201 5093791 ~ 5094514 (-) False LOC122343483
TU38911 lncRNA upstream 98882 5122472 ~ 5122750 (-) True G26225
TU38912 lncRNA upstream 100478 5124068 ~ 5124515 (-) True G26226
TU38914 lncRNA upstream 135495 5159085 ~ 5159407 (-) True G26228
XM_043237819.1 mRNA downstream 52062 4946717 ~ 4957809 (-) True LOC122343386
XM_043236547.1 mRNA downstream 156197 4847862 ~ 4853674 (-) True hsp90b1
XM_043236349.1 mRNA downstream 198819 4765856 ~ 4811052 (-) False sbf1
XM_043237960.1 mRNA upstream 54062 5077652 ~ 5083675 (-) True LOC122343475
XM_043237970.1 mRNA upstream 61500 5085090 ~ 5094640 (-) True LOC122343483
XM_043236960.1 mRNA upstream 76774 5100364 ~ 5102901 (-) True LOC122342827
XM_043236973.1 mRNA upstream 79423 5103013 ~ 5194668 (-) True LOC122342833
XM_043237963.1 mRNA upstream 103211 5126801 ~ 5156735 (-) False tmtc2a
unassigned_transcript_303 other downstream 244704 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 244931 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 252044 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 742376 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1405601 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 693456 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 695422 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 706428 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 706428 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 706428 5730018 ~ 5736946 (-) False G26408

Expression Profile