RNA id: XM_043237806.1


Basic Information

Item Value
RNA id XM_043237806.1
length 2872
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC122343379
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15342262 ~ 15355555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAAAACAGATCCATGAGATCACATGAGCTTTAATCGTTGGACTATTTCCGCATTGGCTCAGACAGTGAATGGAGGAGCTGTGAGTTGAGTactattaatttgttttaacgTGTCGCAACGCCTTGGATCGAGCTGGGGGGAACATCGGGCAGAAGGAGACGCACGGAGACGCGGCGCTCCGCAGACATGCTCACTCGCGTCAAATCCGCCGTGGCTAGCTTCATGGGGGGAATCATGGCCGGatcttctaataataataatgaacgcTCGGGTGGCTCGGACCTGCCGCTTAAATACCCCTACATGAGACCCAAGTTTCTGGGACTGTCGGCAGATGAGATAGAGTGCTCGGCGGATCACATCGCGAGACCTATCCTGATCCTAAAAGAGACTCGCAGGTTGCCGTGGGCGACGGGATACGCCGAGGTGATAAATGCAGGTAAGAGTGCACTGAATGAGGACCAAGCTTGCTGCGAGGTTGTACTGGTTAAGAAGAAACCTATAGGATCCTTGACACCCAGAAAGCTGGCTGCAAGTAGAAGGAGGTCATCTATTCTGAATAGCGATGGTGTGGGCATGTTGGAAAATAATAACACCACAGGCATTCCCATGCACTTCTGGGGAGTGTTTGATGGACACGCCGGCTCTGGAGCTGCTCTCATGGCATCCAAACTTCTCCAGCGTATGATCCTTGAACGACTTTGTGACGTGTGTCATCTTCTCGAAAATCAAAACAACCCTCCGCCTATCTGTCTGGCTAAGAACGGGAGCCCCTTCCAGGCTGAGGCAAAGAAAGGGGCTTGCCTAGATGGAGAAGAGCAGGATGGGCTTCTGGATGAGCCGCGGTTCCACATGGAGAAAGATATCAGCGTGGAGAGCCTGGTGATGGGGATCATAGAGACCGCCTTCAGAGACATGGACGACAAAATAGAGAAGGAGAAGGAATCTTACAGCATCTCTGGCGGCTGTTGTGCCTTGATTGCAATTCACTTGTTGGGGAAACTCTACGTAGCAAATGCTGGAGACAGCAGAGCCATAATTGTCCGAAACAATGAGGTCATCCCAATGTCCAATGAGTTCACACCAGAAAGTGAAAGGCAGCGGCTACAGTACCTGGGCTTCCTCAAACCGGAGCTGCTTGGAAATGAGTTTACACATATTGAATTCCCCAGACGTATCCAACACAACGAACTCGGCAAGAAGATGCTTTTTAGAGACCACACAATGACTGGCTGGGCATATAAGACAATTGTCGAAGACGATCTCAAGTTCCCGTTGATTTATGGGGAGGGGAAAAAGGCTCGAGTCATGGCTACTATTGGAGTAACGCGTGGTTTAGGGGATCATGATTTGAAAGTGTACAACTCCAACATTCATATCAAACCTTTCCTATCCTGCTGCCCAGAAGTCAAAGTGTACAACATCTCTGAGCACAAACACGGAGCTGATGATGTACTGATCATGGGTAGTGATGGACTATGGGACGTTACAACTGACAGAGATGTTGCTGACGCAGTAACGACTTTCTTGTCTGGTCGTGAGCCCAATGATCCCTTAAGgtacacttCAGCAGCACAAGACCTCCTGATGCGCTCGCGCGGAGTCCTGAAGGAGCGAGGCTGGCGGCTGCCCAATGAGAGACTTGGCTCCGGTGATGACATCACCGTGTTTGTCATTCCATTGGCCGGGGCAGAGTTAGAAACATGACCGGGTCGGTCCACCTTCACTGGACAAGCACACCAGGACACGTCCCTGGCTCCATCCCAGAGAAAGGGCTAGGAAATCCAAGAAATCCATTTTCAATCCGTCAGAAGGCTCGGATACGAGAGACGTTACATGCAACTTCCCcttgtcctcctcctcctcctcctcctcctcgtcgtTCCATGAATATCGTCAAGCCCATGTCAGGTGTGAGGTGACATCATCAAGTGCCATTCCTCTCGCTCTCCGTTTCCTTTCTGATTTGTCGAACGCACCTCTGCAAGTCAGTACGGGATGGTAGGGCTCGTATCCCTTGAGTATTCTTTAACATCGGTGGGTCGTTTCAATCTCAATCTCGGTGTGGCATAAGGAAAAAGCCAATACTGCTAAAACATCAGCCCCGATGGCAAGAGAAATAAAAACCGAAGCACTTTATATGTAGCAGAATCCATTTGAGCTGTAATTCAACTGCTTATTATATTTCTTAACTGTTCTCGGACTGTCTCCAAAGAATGTTTCCTTCGACTGAATATAAGGTTTTCTATAGCAAGATGCAAtcaacgacaaaaaaaaaaacgatgggCATTTCCTGCGAATGCTGaggtttttgttcatttcagctGTTTCGGGTTCAAACGGGCATCCTTTTAAATGGAAGCAATGCAAACGTCTATATTCTGGAACTCGTATAAAATATAGTTCTGTAGAACTAGGCTCATTTTCCCTAGACCTATCAATAAGCCATGTACAAATAACCCAAAACATCCAGTACAGCGCAAGTCATTGACATCGCCGGGCTTTTCATTCACAACCGAACTGATTGCTTGAACTGCTGTAGATTTGAACATCGTAGCTGAATGGCCTGTTTATTTTGCTGTAGATAAAACCTGATTTGGTCTGAAACCGTGTCAGTGAAGAATCTCAAATCCAACAACCATTTAGATCAAAACCTGAAACTGAGAAACCTGGAATTAGTTTCGTCAGTCATTGGTCTTTTTGTAAACCTTGAATGTACCTGAAATCCTTTATTTGATGTCAGTGTTGTGTCTGTGGAgtacatagtaaatatatattgatttctGACTTTCGAATGATGATTCATTGTCAAAGGATTACTCTTTGCAAATTATGTGActaattctaaataaatctaTCCTTTTTATAA

Function

GO: NA

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250764.1 lncRNA upstream 758 15339618 ~ 15341504 (+) True LOC122343380
TU42594 lncRNA upstream 227734 15114111 ~ 15114528 (+) True G28745
XR_006250624.1 lncRNA upstream 478162 14863033 ~ 14864100 (+) True LOC122342648
TU42569 lncRNA upstream 487511 14834630 ~ 14854751 (+) True G28726
TU42486 lncRNA upstream 532601 14808597 ~ 14809661 (+) False G28667
TU42685 lncRNA downstream 18555 15374110 ~ 15374537 (+) True G28797
TU42692 lncRNA downstream 57592 15413147 ~ 15420303 (+) False LOC122342869
TU42711 lncRNA downstream 132521 15488076 ~ 15492182 (+) True G28813
TU42719 lncRNA downstream 209944 15565499 ~ 15655181 (+) False cdkn1d
TU42723 lncRNA downstream 209944 15565499 ~ 15655278 (+) False cdkn1d
XM_043237803.1 mRNA upstream 129558 15157755 ~ 15212704 (+) False LOC122343376
XM_043237801.1 mRNA upstream 129558 15157755 ~ 15212704 (+) False LOC122343376
XM_043237804.1 mRNA upstream 129558 15157755 ~ 15212704 (+) False LOC122343376
XM_043237805.1 mRNA upstream 184628 15149133 ~ 15157634 (+) True creld2
XM_043236577.1 mRNA upstream 198851 15136921 ~ 15143411 (+) True LOC122342621
XM_043237013.1 mRNA downstream 57592 15413147 ~ 15414545 (+) True LOC122342869
XM_043236561.1 mRNA downstream 240106 15595661 ~ 15602006 (+) True nup50
XM_043236025.1 mRNA downstream 282957 15638512 ~ 15644874 (+) True LOC122342219
XM_043236428.1 mRNA downstream 294795 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA downstream 294941 15650496 ~ 15653260 (+) False cdkn1d
TU42601 other upstream 127830 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 859441 14400029 ~ 14482821 (+) True tafa5a
TU42445 other upstream 859441 14424931 ~ 14482821 (+) False tafa5a
TU42431 other upstream 1158002 14177464 ~ 14184260 (+) False tbc1d22a
XR_006250622.1 other upstream 1350490 13985517 ~ 13991772 (+) False trmu
TU42701 other downstream 83779 15439334 ~ 15555682 (+) True G28806
TU42722 other downstream 294740 15650295 ~ 15655181 (+) True cdkn1d
TU42853 other downstream 485817 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 629664 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 1118343 16473898 ~ 16474381 (+) True G28982

Expression Profile