RNA id: XM_043237809.1


Basic Information

Item Value
RNA id XM_043237809.1
length 4366
RNA type mRNA
GC content 0.41
exon number 12
gene id brd1a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15124045 ~ 15136539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAGTGATGTTGTGTGACCCTATGAGCGAGCTGGGTACGTCATGACGCCATGCGTTGCGGGTGGGACTTCTTATTCGTAGTGAACCATCCGCATTGTTGTTGGTTGCAAGCGGAAAATCATATCGCTGCTGCAAGGGAACCGACGTTGTCTTTGAATGGCAATCAAACCGAGCGTTTTTGTATTgattattagttaataattatAGTCCTGGCGGTCGCTGTGGTTCAGCGTTTGCAGTATTTCAGATTTATCCATGCAAATGTAAATTGGTGGTCCTTGTATGAGAACATTGTGTACGGAATAACTACAGGCCACCTCGCCAGAAAGCTGCTCCTTTCTTTATTCAGCAGATCAGAGctttGTAAGGATCCtcaatgaaaagaaaatctctGCCTCACAAAGTATTCTCCCCTCAGTGTCTACCTTCCCCTATCAAACTTTCCTCAAATCGTGAGACGCTGACTTACGCCCAGTCCCAGAGGATGGTTGAACTAGAAGTTAATGGCCGGTTGCACCGGATCAGCATCTTTGACCAGCTCTACATCATCACAGATGAGGATCCCATTGCACAGGAAATTGTGGAGTGTAACAGCAATAAGGAGAATGCTGAAAAACACCAACAGGTCTTAGTACGTTCTGTACGCCTCAGAAACaaccagcagaaaaaaaacactgctgtcACTGCACAAAATGCTTTAGTGCAAGGCAGCACTCTTCCTGAGCCCAAATTCCGCACTGTGGATTACAATCTTCCAGCGATCCCACGTAGACCTTCTACATACTACAAGTATGAAGAAAAAACTTCAGAAGAGCTGAATGAGGAGGTGGAATATGATATGGATGAAGAAGACTTTGCCTGGCTTGAGCTAGtcaatgagaaaagaaagaatgaaggaCTTAACCCGGTTTCTCCTAATGCCTTTGAGTTCCTTCTTGACCGTTTtgaaaaagaatcatttttagagAGTCAGGACCAACAGAGTCTACAGTCCTTAATCGATGAAGATGCTGTTTGCTGCATTTGCATGGATGGAGATTGCATGGACAGCAATGCCATCCTGTTCTGTGATATGTGCAATCTAGCCGTTCATCAGGATTGTTATGGTGTTCCATATATTCCAGAGGGACAGTGGCTTTGCCGACATTGTCTGCAGTCCCCAACACAACCTGCTAACTGCATCCTCTGCCCTAACAAGGGAGGAGCAGTCAAAAAGACAGAGGATGACCAGTGGGGTCATGTTGTTTGTGCTTTATGGGTTCCTGAAGTTGGGTTTTCCAACACAGTCTTCATTGAACCTATTGATGGTGTTTCAAATATTCCGCCAGCTCGATGGAAGCTTACCTGCTACCTCTGTAAAGAAAAAGGTGTTGGGGCTTGCATCCAGTGCCACAAAGCAAACTGCTACACTGCTTTTCATGTCAGCTGTGCACAGAAAGCTGGTCTCTTTATGAAAATGGAGCCTATTAAAGATTTGACTGATTCAGGTGTACCAACTTTCTCTGTGAAAAAGACAGCCTACTGTGGGGCCCACACCCCAAATGGCTCCATTAAAAGACCACTTACAATTTATAATCAAACGAAGACAAATGACAAATTTTGTCAGTCAGTGGATAAAAAGAGCAGGACTaggttaaaaaaacagaagagacTTAAAAACAGTGAGGCGGAAGTTGTAGGCCCAGTTCCAAATGCATCTGTACCTAATTTGTCACTTGAAAGGTTACACACAATCCTCAACCAAGTTTCTTTACAGAAGAAGAAGGCATTTGGTGAACTTGTCTTGAATTATTGGATGCTTAAGAGACTTTCAAGGAATGGAGTGCCTCTTAACAGACGCCTCCAAACTAGTCTATATtcccaaaaaaacacacagccgaaacagacaaaagaGGAGACTGAAGCACTGAAGGAGCAGCTGAAAGAGTGGCAGCGGTTGAGACATGACCTTGAACGAGCAAGACTCCTGCTAGAGCTGataaggaagagagagaaactcAAGAAAGAAGAGATTATGCTTCAGCAGACGTTAATGGAGGTCCAACTTACTCCTTTCACAGTCCTTCTGAGGACTGTGCTGGACCAGATACAGGAGAAAGACCaagcaaatatttttgcacAGCCTGTTAGCATTAAAGAGGTGCCTGACTATATGGACCACATCTTGCACCCAATGGATTTTTCCACCATGAGGAAACGCATTGATGCACAAGGCTACAAGAATCTGGATGAATTTGAAGCTGACTTCAATCTCATTATTGAAAACTGCATGAAGTACAATGGCAAAGATTCATTCTTCTACAGGGCAGCTGTTCGATTAAGAGACCAGGGTGGAGCTGTGCTAAGGAAAAATCGACGAGATATTCAGAGAATTGgctttgattttgaaactggcATGCACCTGCTTGAGCCACCTAAGATCGAGCCACCTGCACCTTTCTCCTGGGAAGATGtGGACCGCTTATTGGTTCCAGCCAATCGAGAGCACATGTCATTAGAAGAACAGCTGAGGGAGCTACTGGAAACCTTGGATCTGACTATAGCAATGAAATCCAGCCCATCACGGGGGAGACGTCTAAAGCTGCTTAAGAAAATCATTAGTGATGTAAGGATGGAGCTGAGTGTGAAGAAGGCTTTTACTGCTGTTGAACATGAGAATGCTGTAGAAGTAGCCAGCCATATCCTTCAAAAAgAGCTGTCAAACGGTTTTGATCTGGAGTCAGATAAAGAATTGAATTCTAGCAGTCAGTTGGAGCCTCGGCGCAGGTGTGCGTCTGAATCTAGCATGTCCTCCAGCAGCAGTAGTATTGCAATCAATCTACCGAAGTGTGGAAAGGGGAAGCCAGCCCTTATCCGGAGGAATACAGTGGAGGACAAGAATGATATTATAGCTTGCATTGAGAGTAGAAACTTTGCCAAGGCTGCTAGAATAGCTGCTGAAGTTGGAAACAGCAGTATTTGGATGCCTGCTACTGCTGCTACTGTTCTGGAACCTCTCAAACTAGTTTGGGCTAAATGTAGTGGATACCCCTCCTACCCTGCCCTGataATAGACCCTCACATGCCACGAGTAGGGTGCCAGCACAATGGAGTCTCTATCCCAATGCCCCCGCTGGATGTTCTACGGATTGGAGAACAGATGCAGTACAAGTCCGAAGAGAAACTTTACCTTGTTCTCTTCTTTGACAACAAACGTAGCTGGCAGTGGCTTTCAAAATCCAAGATGGTTCCTCTTGGTATTGACAAAACCATTGACAAGATTAAAATGATGGAGGGCCGCACATCAGCCATCCGCAAGGCTGTCCAGACTGCCTTTAACCGTGCCATGAACCATCTGAGTCGAGTCCAAGATGAACCTATTAGCGACCTCAGTGATGTTGATTAAGATTTGCAAATGTAGACAAATTTCAAAGCCTTACTAATCGTCATTGCTAAATGGCAGTTGCTGTGTGACTTCTGTGCAAATTAAAACAGGAGTGGCAAGTATGAAGTAAATCAAAATACAGAAGTCTCAAATTAGTTAAATcagtaaataatgtaatgtaaataatgtaaattgttTATCAGTAACTTATTCTTCAGATTTAAGTAATGagtacatactttttttttaatactatttatacattttaatggatTATTCACGGCATAAAAACTCACTGATGCTGGaacaaatggacaaaaaaattgttatgcTTAAAGAATACTGTAATCAGGGCTGGAACATGATGTGAGAGtacttgttttttatatttaaatgattaaagttTGTATACAGGCTTTTATTTGGCATTGTTTTTGTAACCTAAGAATGTTTTTACAAGTTTAAcctattttgatgtatttatataactaaatataactTTATTTGCCTTTTCATATTAGTAAGTCAAGTTGTTATGAAAACCTCAAGTGCGTTATTCTGATATTCTAATgaaaccaaaaaagaaagaaaaaacaatgctGCCCAggcttttgtttgtgttcagttaatggttttgtttaatttttttttttttttttttttaatgtttgtatttgtatatggGAACTCCATGATGGCTGTAGGATACTGTAGTTGTACTGGTGCTAATTTATTGTGTTGGGTGGTATGTTTATTCACTgggaaagaattttttttttcttttggactTATTTGGAATTATTCTtggtttttttgggggttttttttatcagagCCTGTTTACATTGACTTccttaatttagttttactaTGGGTTTTAGTATGTGgattttgaatactttttttaattgtatgtcgtatatatgttgttttagtTGGTATTACAACTGTTGATTGAAttgtccttttttatttttatttttaataaattcataacCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250554.1 lncRNA downstream 100182 15017785 ~ 15023863 (-) True LOC122342397
TU42586 lncRNA downstream 120616 15003149 ~ 15003429 (-) True G28738
TU42554 lncRNA downstream 298207 14811440 ~ 14825838 (-) True LOC122342647
XR_006250623.1 lncRNA downstream 298208 14823773 ~ 14825837 (-) False LOC122342647
XR_006250560.1 lncRNA downstream 1053640 14068087 ~ 14070405 (-) True LOC122342415
TU42674 lncRNA upstream 73145 15209684 ~ 15213451 (-) True G28789
TU42788 lncRNA upstream 280317 15416856 ~ 15418238 (-) True G28850
XR_006250641.1 lncRNA upstream 307225 15443764 ~ 15445229 (-) True LOC122342747
TU42824 lncRNA upstream 428880 15565419 ~ 15655181 (-) True G28870
TU42849 lncRNA upstream 596824 15733363 ~ 15733883 (-) True G28887
XM_043237012.1 mRNA downstream 96382 15025384 ~ 15027663 (-) False LOC122342864
XM_043236616.1 mRNA downstream 276868 14826267 ~ 14847177 (-) True LOC122342646
XM_043236615.1 mRNA downstream 301384 14811008 ~ 14822661 (-) True LOC122342645
XM_043236614.1 mRNA downstream 301384 14811008 ~ 14822661 (-) False LOC122342645
XM_043236612.1 mRNA downstream 313334 14808543 ~ 14810711 (-) True LOC122342642
XM_043236578.1 mRNA upstream 7249 15143788 ~ 15148210 (-) True alg12
XM_043236319.1 mRNA upstream 418712 15555251 ~ 15588908 (-) True LOC122342488
XM_043236562.1 mRNA upstream 464901 15601440 ~ 15611575 (-) True kiaa0930
XM_043237519.1 mRNA upstream 476579 15613118 ~ 15632452 (-) True large1
XM_043236027.1 mRNA upstream 507650 15644189 ~ 15647843 (-) True sapcd1
TU42583 other downstream 96427 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 96427 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 313908 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 426859 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 947320 14169422 ~ 14176725 (-) False cerk
XR_006250613.1 other upstream 464901 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 710430 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 720845 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 743582 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 743981 15880520 ~ 15880638 (-) True LOC122343711

Expression Profile