RNA id: XM_043237811.1


Basic Information

Item Value
RNA id XM_043237811.1
length 5429
RNA type mRNA
GC content 0.50
exon number 39
gene id LOC122343383
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8780290 ~ 8803840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatttttattttaatttttttgcaactttACATAGCATGTTTCCATTTtgcatttatgaaatgttttctttatataatttattatactataaataaattatactataaataatcatttatttgaaaaaacatgCGCACTAATTGGAGCGAAAACGCGCGGAATCTCTGAAGCGGAATCTCTGAATCAGTCAGTTGTAGTTCCGCGGTCGGCCGCACGGTGTCAGTGCGGCGCAGGTTTTATCACGGCCTTCGGTCAGCTGTTGGGTTCTTCACGCTCTAGCGTTTCGCGAACCGACCGCGGCGGCAACGTTTGAACagattcagCTCGAGGCTTTCTCTCTTTGCTCGCTCCAGCATGGATGTCGGAGTGACCCCAAGACGTCACAACCCTGTGGACAGCATCTGCCGCAAGCTGCAGACCATCCAGAGGCGAGATCAAGAGGCTAACTCTCCCTTTCAGATCCCTAAGTTCCAGTCCAGCAGCTACGACAGCCCTCACTCGGGTCTGCGCCTCAACCTGGAGGCCATCCTGAAGAAGCGTACCGTCCGACCTGACGGAGACTCTGACCGCGATTCGTCAGGGAGCATGCTGACCCCCACAGCTTCCCCGGGACCGGGGTCTGCCGCCAACACCCCTCGGGCTCCCATCACACCCGGCAATGCCACCTATACCATTACCAGCACTCTAAGCGCGTTAGGGGAGAGGAGAAACACAGCAACGTACAGCCGGCCGTTTCGGCGTAACTGCTCCACCCCAGCAGCCCAGACCGGGGACAATTACTTTAACTTTACCCCACGCTACTCCACACAAACCCTGCTGGAGGGGCCTGACACAGAGGTGAAGACCCCAAAAATCCCAGCCCCTGGCTTGTTCTCGTATAACTTGAACTTCTCGTCAGATATTTCTAACATGGACGGCGAACTCGCCTACCCGGCCCTTGTGGTCAAGAGGCTTTCACTGGGCGAGGGATCTCTGTTTCCCTCTGAGCCCAAGAAGGAGAGCATGGCTGAGGTCAGTTTGATTTGTGAGGAAGACCTGTTGGATACTATCTTTCAGGCCTGTGACACGCACTGCAGAGGTAAAGTTTATGTATCGCACATTGTGGACTTCTTGAGACACACCACTTGTCGCAGTTCAGAGGACAGTGGCCTAGAGGAGCTCTGCAATATGCTGGACCCAGAGCACAAAGACATCTCCATAGACCTGGACACCTACCATGCTATCATGAAAGAGTGGATCGATGATTGTCGGAACCAGGGAAAGGACTCAAAGAATGACACCCAACAGGAATCGTTCAAACTACGGGACAGTTTAACAGcaAGAAGATCTGCTCTATTAAATATGACCTCAGGTAGTCTTGAAGCATTCGGAGGGGAAGTCTCCAGAGCTGACCTGGAGACATCAGATCTGGTCTTCTGTGTGGCGGATCTGCAACTTAATAACCAAAAGCTGCAGGAGGAGGTTCGTAAACTGAAGCAAGCGGTGGAAAGCATGGAAGACACCAACCAGAAACTCATTGAGGAAAATGAAGAGCTTAAATCACAAGCTAAAATAGGGCAGCAGTTATTACAGAAGGAGAAGATGCTTAAAGAGGAAGTTGAGGAGATGAAGCTGAGCCTGACCTCTTCAGAAGAAAGTCGGGCTCAGGCCTCAGCTCAAAGGAAGCAGATGGAGCGGGAAAACCAAAGTCTTATATCTAAAATTGCTGCTCTACAAGAGGAGAACATGAAAGTCACCCTGGAGGCAGAAGAGCTTCAGAAAAAGATCAGTGACCTCTGTGACCTTAATGCTGACCTCCAAGTTCAAGTTCATTCATTTGATGCCATTCTGGCTGACAAGGAGTCAATAATTCAGGAGaaaaataaacagacagatGAACTGAAGTTGGCCGTTGTGGAGTATTCCTCAGTTACAGAGCTGTTGAGAGCTGACAAGAACAAACTGGAGAGTCAAATGCAGATGATGCAGCCTGATATGACAATcccaggtctctctctctccgtggcCTACAGACTGAATCAGATGAGTTCAGGTTCTCTTCAGACAGAGCTGGCTCTGGCACAGAATCCCCTGGAGgGTTTGGAGCATTTATCCTCCTCCGTTTGTTTTGCGTCTTCTTTGGATGAGACTCTAGATCGCGAGGTTCTTCTGCTTCTCCAAGGCCCGACTCCAGAGCAGCTTTCGCTGGAATTTAAAACTCTGATCAGCAGACTGAAAAGGGAGTTTAAGGAAGATGGCATCACCTGTCTCGCAGCATTCAGAGGCTTTACAGAGACCGGTGAAGCTCAGGAGATCAACACTGACCTCAAGATGCAGGGCCTGGAGGTGCAGCTTGAGCAGAGAAGGAGTGACTGGACCCGCAGTCTGGAGCAGTTGGACCAATACACAGACTCTCTAGAAAGGGAGCTTCTAAAGATGGCTAGCAACATGCGTCGTTCTCGTACTGAGATCCTGCACCTGTCTGTCAAGGTACAAGAGCAGGAGAATCAAAAGCAGCAGTTGCGAGAGGAACTAGACAGGCTGAAGACTCCGCTAGACAACAGAGAGGCCAGCAGCCAAACACCGGATCACCTACAGCAGGTTGCGGAAGAGCTGGATGACCCTTCTCTCGAATGGGATGAGGAATACGTGTTGTCTGAGTCTCCGCCTTTACAAGAGCTCAGGCCTGACCAGGAGATGCTTCAGGAGCTCTGTTGTGATGAAGAGGAACTACAGGCCCTAAaacaggaggaagaggaggaggtggagcaCACAGAGACCGTAAGGGACAAGGAGATCACGGAAAGGACTGAGGGAGAAGGTGCAGCAACACAGGATTCTAGGGTAGAGACAGAGGAGCGACAGAGAGACCCCACCCTCACTCAGACGCCGCTACCAAACAACACCACTGACAGAGAATCACAAGGTCAAATGGGGGGAACTCTGTTTGTAAATGAGGGAGGAATGCAGAGGCCTTGCATAGCTCTAAAGGAGGAAGACAgactcccagaatgcactgggCCTGAGGACGCCCACGAGCAGGCTGCTCCTCTGCCTCACACCCACAGTCAGTGTGCTGATGCGTCTCTGAGCTCCGAGACGCCCCGTGAACCAGTGACCTCAGTCAAACACCTTATTTCGTCTACTGAACCTTCTTCCCTTGTGAACTCGGAGATAGCATCTCCCTCCACGGGCCAGCCTGAAGTTAGAGATTCCATTACACGAAGCACCCAGCAGCCAACTGCCGCAAACGGAGCATCCGAGGGAGAGCGTGCGGCCGCCACAGCCGACATGAGTGACTCGCAGAGACTGAGTGAGGGGCAGCTTTCTAAAGTGTCTGCAAAATCGGACAAgaGTCCCTTGTTGCCAGTcgcagaggaagaggaggccATGCCAGAGGCTGCAGATGTGATATCAACTGGGGTGAACTCACCAGACAAAGACAAGTCAGACAGCAAGAAGACTGCGATCACACCCGACTCAAACTCAGCAGCCTCAGCTGGCTTATTGAAGGATCAATCTGAAAAAGCGAAGGATATGACCTTTGACCCCACTGTCAGTGAGGGTAATCTTCCAACAGTCCCTGCTGTGCAAGGCTCCAAAAAAGACCCTCTGACTCTGAGGAACAAGCTCAAGAAAGAAATGAGCAGTATGGAAGCCATTGAGGAGCAAAAAGCTCAGGATGGTGAGCCTTCAGTGGTCACAGAAAAAGAAGGTGACGCATCCGTCATCTCTGAAAACGCCAGCGATTCCACCAAAGATGACAAGAACAGTCTGTCGCCAAGTGACAAAGAGATAGAGGCGGAGTTTCACCGTCTCTCTCTGGGCTTCAAATGTGACATGTTCACCCTGGAGAAGAGGCTACGTCTTGAGGAACGCTCACGGGACCTGGCTGAGGAGAACGTTCGTAAGGAAGTGAACAGTTGTAAAGGTCTGCTGCAGgccctgattCCACGATGTGAGGAAGATAACCAGTCCATGGAGATCATCCATCGTCTGCAAAAGAACCTAGAAGTCCTCATTCAGTCCATGACCAGAGTGTCCAGCCGTTCAGAGATGCTTGGAGCCATTCATCAGGAGACCAGAGTGGGCAAAACGGTGGAGGTGATGATTCAGCATGTGGAAAACTTGAGGAGGATGTATACCAAAGAGCATGCAGAGCTGGTGGAGCTCAGAGAGAACCTCACGCCGAATGAGAGGTCCTTTGGGTCCCACACTGAGAGGGATGATTTCCGTAACAAGAAGCAGTCAACTGCAAACATTTTCAAAaccACTAGCAGACGCATCAGTATAGCTACCATTCCTCGCAGCAGTGGAGGACAGACCCATTTTGACATGCCCAAAGACATGGCGGAAACTGAGGTAGAGAGACTCTCCCGTCGATCACCATGGAGCATGGCAGCCAAGAGGCCACCACTAAAGCGCTTCATTAGCTCTGGTACTTGGGCTGACATTGACGAGCCCACTCTGATGAATAGGTATGGATATGACACAGACTCTCACTCGGAGGAGGAGCGGAAAGAGGAACGAGCAGAAAGGAGTAGCAGCATAACGGAATTAGGCATCAAAATCACTTCCTTCATAATGCCAACTAAGATTCCCAGCCCCAGCCCCAGCCCGACAGATCACGCTCCACCCAGTCTGACCGATGGGAGGCCCGCAGTTTCCCGAGGCACCAGGGGCATTTGGATTTGGGTGGCCTTGCTTGTAGTTCTAGCTGTTCTACTGGCCCTGCTGGCGAGCCTGATGTTACAGCCTGCAGTAGATGCAGCACCTGTGGGCACCGGGGACTCCTGGATGACCATCCAGCAGCTTCTGTGGCCCTATACTGGGCTGAGGCACAACGGCCAGCCCCCTGTGTGACACCAGGGGGTCGGCAAGGCTGCAGAGGCCAGTTCTGACTGTGATGCAACACTACTGCCTGTCCTcttaaaagaacactttgtgACCGCTTCTCACCGAAGGTAAAAAGAAATGTGGGCGTCTTGAGAAAGATGTGCTGAAAACCGCTCAGATGCTGTGTACACAAACCGTTGGGTTGGCCGCATATATTATAAACACTTTTGAGACGGTCAGTGCCAGCCGGTGACACAGTGGATATTTGGATTAGAGTGAGATGAGCACACTGCAACAGTGTGAATGTCAAACATCATTTCGGTTGCCTGAAAAGgctgcctttttttaaacattttcaaattgatCAGTGTATTTTTATGGGCAGTTTGAAAGAGTATTGAGatgaaacctttttaaaaaaatattttttctttttgttaacttattttaaagttttatgcagtagattttttttctcaaatattattgttacaaacACATGGTTTTTATCCTCAAGCTGTTGGTATGGTGTTCACTGTAAGAAGTTCATACACTTTTGTATGTTCCAAAGAGGGGGGAGGAAAACTTTGCACAATAAAAGAAACTGATCCAA

Function

GO:

id name namespace
GO:0051984 positive regulation of chromosome segregation biological_process
GO:0035046 pronuclear migration biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0007344 pronuclear fusion biological_process
GO:0051028 mRNA transport biological_process
GO:0000785 chromatin cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005813 centrosome cellular_component
GO:0097431 mitotic spindle pole cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250765.1 lncRNA downstream 6119 8762099 ~ 8774171 (-) True LOC122343385
TU40347 lncRNA downstream 243614 8533831 ~ 8536676 (-) True G27249
TU40343 lncRNA downstream 262888 8516294 ~ 8517402 (-) False slc25a3a
TU40342 lncRNA downstream 265445 8513867 ~ 8514845 (-) False slc25a3a
TU40326 lncRNA downstream 301979 8476164 ~ 8478311 (-) True G27240
TU40386 lncRNA upstream 316 8804155 ~ 8805230 (-) True G27263
TU40372 lncRNA upstream 1405 8805244 ~ 8809184 (-) True G27257
TU40361 lncRNA upstream 5928 8809767 ~ 8815012 (-) True G27253
TU40363 lncRNA upstream 5928 8809767 ~ 8815012 (-) False G27253
TU40364 lncRNA upstream 5928 8809767 ~ 8815012 (-) False G27253
XM_043236838.1 mRNA downstream 27456 8579051 ~ 8752834 (-) False sox5
XM_043236837.1 mRNA downstream 27456 8579051 ~ 8752834 (-) False sox5
XM_043236836.1 mRNA downstream 27456 8579051 ~ 8752834 (-) True sox5
XM_043236839.1 mRNA downstream 129835 8579051 ~ 8650455 (-) False sox5
XM_043236843.1 mRNA downstream 129837 8579051 ~ 8650453 (-) False sox5
XM_043237544.1 mRNA upstream 39368 8843207 ~ 8857050 (-) True LOC122343226
XM_043237543.1 mRNA upstream 39368 8843207 ~ 8855299 (-) False LOC122343226
XM_043236988.1 mRNA upstream 66376 8870215 ~ 8874598 (-) True th2
XM_043236987.1 mRNA upstream 70873 8874712 ~ 8885016 (-) True pah
XM_043237952.1 mRNA upstream 88180 8892019 ~ 8941271 (-) True LOC122343470
TU40311 other downstream 312262 8460506 ~ 8468028 (-) True G27232
TU40263 other downstream 531065 8247911 ~ 8249225 (-) False LOC122343432
TU39958 other downstream 1221837 7555115 ~ 7558453 (-) True G26951
TU39663 other downstream 2040695 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 2418847 6350503 ~ 6361443 (-) True msrb3
XR_006250786.1 other upstream 90345 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 91953 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other upstream 91953 8895792 ~ 8941271 (-) False LOC122343470
XR_006250745.1 other upstream 200421 9004260 ~ 9009304 (-) False klhl42
XR_006250565.1 other upstream 468133 9271972 ~ 9300179 (-) False uhrf1bp1l