RNA id: XM_043237819.1


Basic Information

Item Value
RNA id XM_043237819.1
length 3952
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC122343386
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4946717 ~ 4957809 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGGCCGTGACGTCAGACGTCAATCAGAGCCCGTGCGCGCAAATACAGTAGGAGCTTATCGTTGAACGGAGCGCATTTCGGTCCGTAGTTCGCGCGTGCACACCGCGAAACCGCGTTGTCTTTATTCGGATCCTAGGCACCTCTTGTTTTCCTTTAATTCCAGCCTTATGAGATGGAGAAGAGGGCGCTTTGGACATGCTGTTATCTTGTGCGCTTTGTAACCCTCTTACTCTGCGCACGAGCGTCAGGCAACCTGCCACTGTGTAAAGAGACAGACTACTACTTTGAGTACACAGAGTGTGACAGCACAGGCTCCAGATGGAGAGTTGCCATTCCTCACAGACAGGGAAGCTGCTCAGGCCTTCCAGAGCCTGTCAGAGGCACAGACTGCACTTTTTCTTGTGAAGCTGGGGAGTTTTTAGAGATGTCATCCCAGCAGTGCACGTCATGTGCGGCCGGCTCTTATTCGCTGGGCAGCGGCGTGCGTTTTGACCAGTGGGACGCCATTCCTGCGGGATTCAGCAGTTTGGCCACATACATGGACTCAGGAGGTTCAGGAGACGACTCAATGACCTGCAACAATTCTTCATGGACACCTCAGGGAAGTCACTTGGAATCCAATCGTGACGACTGCACAGTGTCACTGGTGTATGCAGTGCATCTCATGAAGCAGGGATCCGTCTCCTTTGACTATCAATATGTCGACAGCAACGTCTTCTTCGAGTTCTTTATTCAGAATGATCAATGTCAGGAGATGGACCAGACAGGGAGTGAGAAGTGGATCAAACTCACCTCCAATGGAGAGTGGGGAACGCATACGGTAAACTTGAAATCAGGAACTAATATTCTGTACTGGAGAACCACAGGAATGCTCTTGGGTGGGAAGCCAGTGAAGCCAGTCCTTTTGAAGAACATCCAGATCGAAGGTGTGGCGTACACCTCAGAGTGTTTTCCATGCAGGCCGGGCACCTTCAGTAAAACCCCAGGCTCCTCATCATGTGACCTTTGCCCCAGGAACACTTACTCTGGAAAGGGAGCCAGTTCATGTACATCATGCTCCAAAACACAGTACTCCCatGAGGGATGGTCGCAGTGTAAGGAACGACCTCCTTGTTCAGAGAAAGACTATTTTCAAATTCACACAGCCTGTGATAGTGACGGAAAGACCCAGATGCTGTACAGGTGGGTGGAGCCTCAGGTGTGTGTGGAGAATGTGACTGGCGCTGTGACGCTGCCCCCTTCTGGAGAGAAAGAGGACTGTCCGCCCTGCAACCCAGGCTTTTACATGCACAACTCTTCCACCTGTTTACCCTGCCCTCAAGGCACCTACTCTGATGGCACCACGGAATGTCAAAGATGCCCGGGAGGAACCGAACCTTCTTTGGGATATGAATACAAGTGGTGGAACATCCTGCCGAGGAATATGAAAACATCATGTTTTAATGTGGGCAACTCCAAATGTGATGAAATGAATGGCTGGGAAGTTGCTGGTGACCATATCCGTAGTGGAGTGGGAGGCTCAGATAATGATTACCTCATCTTAAATTTACGAGTGCCTGGATTCAAACTTCCTACTTCTGTGGACGATGCTTCAGCTACAGAGTTCGGCCGAATCACATTTATCTTCGAGACCAACTGCAGCGCAGACTGTGAACTCTATTTTATGATAGACGTAAACAGGAAGAGCACAAATGTTGTGGAATCATGGGTAGGGAGTAAACCGAGACAAGCGTACACCCACACCATGACCAAAAATGCTTCGGTTTCATACACATGGGCTTTCCAGCGCACCAACAAAGCCTCTGATGTGCGTCAGTATGTAAATGACATTGCGAAGATCTACTCGATCACGGTGACTAATGCGATGGACGGCTCGGCGTCTGGTTGCCACGCTTGCGCCATGATGAGTCAGCAGGACGGCTCTTCCTGTGTTCCCTGTCCTGCTGGACACTTCATCAACAAAGACACCAACCAGTGCCAGGAATGCCCGCCCAACACTTTCCTCTCTGGGCATCACATTTACGGCCAGGAGGCCTGTCAGCCCTGCGGTCCTGGAAGCAAGAACAACAAGGAGCACTCTGTGTGCTTTAACGATTGCACCTTCTCGCATATGGATCAAAACCGAACGCTGACCTACGAATTGAGCGCCTTGAGTACAGTGGGGTCGATCATGAATGGGCCTAGTTTTACCTCCAAGGGAACAAAATACTACCACCAGTTTAATATCAGTCTGTGCGGGGCTGAGGGGAGGAAGGTGGCGGTGTGCACTGACAATGTGACGGATCTGTCCAGTAAGGACCTGCAAAACGAATCCGCTGACCTTAACAATTTCGTCGAGACTTTTGTGTGCCAATCGACCATCATCCCTGCGGATGGACGGGGCTTTAGAACATCACTGTCGTCTCAGTCCATCAGCCTGGCTGACACTTTCCTTGGAGCTTCTGTCCACAAAAATCTGGATGGGGTCACCGTCAGCTCAGAACTCTTTCCTGAGTCTTCATGGAAGGTTCCAGATATCAACTTTTTCTATCGctcTCCACAGCCCACAGCATCCTGTCTGAACGGCCGTAGCACAGTCGTGACTCTGCGTTGTAACCCTGAGAAGAGTGCACGCGGAGAGCTCACTGTGCCAAGcAAGTGCCCAGCAGGTACATGTAATGGCTGTGAGTTTCATTTCCTCTGGGAGAGCTATAGCGCCTGTCCTCTCTGCACCGAAACCGACTACCATTCGATAGAAGGAGCGTGCAAAGGAGGAGTGCAGGACACCCTCTATGTGTGGAATGAACCCAAATTTTGCACTAAAGGAGTACCGCTCCCGAACAAAACCTCCGCCCACTGTGAGGTGGTCAGCCTATGGGTGAAGGCCGGAATTGGGGGCGGAGCCTTCATGGCTGTCCTCTTGGTTTCTCTCACATGCTATTTctggaaaaagaacaaaagGCTTGAATATAAATACTCCAGACTAGTGATGTCGGCCAATAAGGACTGTGAGTTACCAGCAGCAGACAGCTGTGCATTAGCAGAGGGAGAGGGGGAGGAGAATGAGGATGATGTTGTTTACTCAAATACTCCTTCGTTACTGGGTAAACTGAAAGCTATCGCAAGCAAGGCAGACGGAGACAACAGCGAGTCAGTACAGCTGAAGTCTTCTCAGTCAGAGAGATGGGTTTTGGGGATAGCTGGAAAAAAAGGGCCGCTactgacagaaagaaagagacaaacacTCATGGAGTTTTCAATGTTTTGACACTCCTTCCTCAGTTTCTGAATATCTCACACCATCCCCCGTCAAATATCTGAGAACATATCTCTATAGGGTCTCAATACAATGCGTTGTGAGTCGAAAAGCACGAACTCTCTCTAAAATTAGCCCCATAAAGTAACCGTATCACATATATACCGCTAAAACTTTCTTGCTTTCTGAACACATCACAGTATACTAAGCATACACCCACGATCTCACCCACAGACACAAGGGCATCAGAGACACATTTGCATCACGGTACGTGCGAACAATTGAACCACTATACTGCAAAATGAGCCTAAAAACTGTATGTTTGCTGGTATGTGTATATaagaatgtttcatttttaagatatatttttccTGCTTCTTCACGCACTAGCATTCATACAATTATATCTAGTGGCTGGCCAACAGATGGAGACAGAGAGTCTTACCGCCACACAGAGCTTCTTTAGTTTCatctcaatgccaaacatcacacAGCAGatctaaaagagagaaaaaaggccCTTGCTTCATGTATTACAGAGAGGACCGTCCTCTCTCCACATCTCTCCTCTCAGGAGAACAAGAGACAATACTGTTTTCtactttgtattttgtattgttgtGTATTTCGAGCTGTATAAAGTTACGTTGAAATATATGGTTTGTTTTACTCCCTGATTCTGTTTATGCTTTAATAAACTTGAAGAGCGCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38776 lncRNA downstream 656 4944128 ~ 4946061 (-) True G26109
TU38757 lncRNA downstream 18012 4920573 ~ 4928705 (-) False G26100
TU38754 lncRNA downstream 18012 4920806 ~ 4928705 (-) True G26100
TU38756 lncRNA downstream 19100 4920573 ~ 4927617 (-) False G26100
TU38730 lncRNA downstream 54010 4889441 ~ 4892707 (-) True G26085
TU38793 lncRNA upstream 50817 5008626 ~ 5008998 (-) True G26121
TU38905 lncRNA upstream 128027 5085836 ~ 5086939 (-) False LOC122343483
TU38906 lncRNA upstream 135982 5093791 ~ 5094514 (-) False LOC122343483
TU38911 lncRNA upstream 164663 5122472 ~ 5122750 (-) True G26225
TU38912 lncRNA upstream 166259 5124068 ~ 5124515 (-) True G26226
XM_043236547.1 mRNA downstream 93043 4847862 ~ 4853674 (-) True hsp90b1
XM_043236353.1 mRNA downstream 135628 4765856 ~ 4811089 (-) True sbf1
XM_043236351.1 mRNA downstream 135665 4765856 ~ 4811052 (-) False sbf1
XM_043236349.1 mRNA downstream 135665 4765856 ~ 4811052 (-) False sbf1
XM_043236348.1 mRNA downstream 135665 4765856 ~ 4811052 (-) False sbf1
XM_043237789.1 mRNA upstream 52062 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237788.1 mRNA upstream 52062 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237787.1 mRNA upstream 52062 5009871 ~ 5023590 (-) True ppfibp1a
XM_043237960.1 mRNA upstream 119843 5077652 ~ 5083675 (-) True LOC122343475
XM_043237970.1 mRNA upstream 127281 5085090 ~ 5094640 (-) True LOC122343483
unassigned_transcript_303 other downstream 181550 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 181777 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 188890 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 679222 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1342447 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 759237 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 761203 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 772209 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 772209 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 772209 5730018 ~ 5736946 (-) False G26408

Expression Profile