RNA id: XM_043237820.1


Basic Information

Item Value
RNA id XM_043237820.1
length 2635
RNA type mRNA
GC content 0.47
exon number 17
gene id dmtf1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4958676 ~ 4965197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAACTCAAACCGCTTTCAGAAGCGGAAGTCACCAGCGGGCTTCTGTAGACGCTTCCGCTCTGTATGAGGAGAGGCAGAAAAAAAAGCGTATCCTCCATCCTGGTATTTGCCTTCATCCTGGTCACTGCGAAGTCCCCGTACCCAAAACAGGAAGCTGAGCATGAACACAGGAGATGTCCCAGCCACTGTGACTCTTGAATCCGTCAATTCTGTCACATTTACTCAGGATACTGATGGGAACATAATTCTGCACTGCCCTCAGAATGATGGGGAGGATCTGGGATCAGACGGGACCACCGAACCTGTTCACAAACGGCTGCGGTTGTCCAATGAAGATGGAGAAGACCCTCAGGACTCTACCTCGACGGAGTACTCTGTTGTCACTCTGCCAATTACAGAAGGTGATGAAAGTTTCGAGGTGACAATGACTGCTACAGAGATGAGAGATGGGGAGCTGGAATCAGACGATCCTTctgaaacaGATTCTTCTGCccaaaaaaaaggtaaagatGTATCTGCTGTCAGTCAAGCCTGGTTCACCACAAAAGAGGATAAAGACACACTGGTTAATAAAGGTCACAAATGGAAACAGGGTATGTGGTCAAAAGAGGAGATTGATCTCCTGATGACCAACATAGAGCGTTATTTAAAGAACCGAGGGATTCGGGACCCTGCAGAGATCATCTTTGAGATGTCGAAAGAAGAGCGGAAGGATTTTTACCGCAGTATAGCATGTGGTTTGAACAGGCCGTTGTTCGCTGTGTACAGGCGTGTGTTACGAATGTACGATAACCGAAACCACGTAGGCAAATACACTGATGAGGAGATCAATAAATTGAAAGAgCTAAGGGAGAAACATGGAAATGATTGGGCTACCATAGGGGCGGTACTTGGTCGCAGTGCATCGTCTGTGAAGGACCGCTGCCGTCTCATGAAGGACACATGTAACACCGGTAAATggacggaggaggaggagagaaggTTGGCGGAGGTGGTCCACGAGTTGACAGGCACAGAGGCGGGTGATGTTGTAACTCAGGGAGTCTCTTGGGCATCGGTGGCTGAAATTGTTGGCACGCGCTCAGAGAAACAGTGCCGCTCCAAATGGCTCAACTACCTTAACTGGAAACAGAGCGGCGGCACGGAGTGGACCAAAGAAGATGACATCAACCTCGTTCGCAGGATAGCCGAACTGGATGTGGAGGATGAGAATGAAATTAATTGGGACATTCTGGCCGGTGGCTGGAGCAGCGTTCGCTCGCCTCAGTGGCTCCGCAGCAAATGGTGGACCATCAAAAGACAAGTGGCCAATCACAAGGAACTTCTCTTTCCTGTCTTGTTGAAAGGGCTTCAGGACGTCGTGGAGGCACCGCCGTCTGCGATGAACAAGGTTGTGGTGGTCGGTTCTCGATCTGCTAGCGCTTCGCCCAGCCCCGTCACAGCACTGCAGATCCCCGTTCAGATTCCAGTGCAGATCACACATGTCTCTTCTTCAGACGGTGCCAGCGGTGCCTCAGACAGTGAAACCATCACATTGAACTCCGGGGCTTTACAGACCTTTGAATTACTGCCTTCATTTCACCTGCAACCCACCGGCACCCCTGGAACGTATTTCCTCCAAACAGGAACAAATCAGAGCCTCACACTCTCAGCCAATCCCACGGTCACACTCACAGCTGCAGCCTCGCCGTCTTCACCAGACCAGATTATTTTACACAGTCTCACCACCGACAATGAGAATGTGACCGTCCAGATGTCCCACCCTGGCATCATCATCCAGACGGTGACCTCAGAGGACCTCTCGGACCCtctcggccaatcagagctgGAGGGAGAGCAGGAGCTAGAGAAGGACGAGCCTTCGGAAAACCAAAACAACCCTGGAGAAGAGGAGCAGAGTGAAGAGAGATCAAAAGATgcacaagaagaagaaaagACTCTCGACTCATCTCTTAAAGTTGGAGAAACTGTAGAGACTTCAGGGATGGGTGAAGCAGCCGTGCTCATGGTGCCGTCTCCGAGCAGCTTTATTCCCACTAACGAGGACATCAGCACGGATTCTGTCCTTCCGCTCGGAACACTGACAGATCCCATTCTGCAGAACCAGGAAGAGGGATCAGACTGATCCACAAGACCCAAAAACAGTGACTTCACAAGATGCGTTCCTTTATGTAGGGACAAATGCAACATGCAGGATCATCCAGACATCATCAAAAGAAACGTGCGTGCATCAAAAAacttcagtatttatttatcatgcaaGTTCCTGAGCCTCATTTGTGTCTcagtgcaattaaaaatattaaatactctgaaactacactttttttatgGTGTATTTGAAATTATGTAACAcactcattattttaaatgttattttttttttgtgtgtatatatctagATTGGACAAGTTTTTGTAGCGTACTTTCCTGCTTAACAGTAAAACTTGATATAAAGCTTTGTAAAGCTGCACTGTTCTGATGTATTAATTAGAGAGATTGTACAAGAATGTTTGCATCATTCCAAATGTTCGTTAGATTAGACGGCCACAGTTTATGTAATGGTTTAAATATTCACCTTATCTGTTAGTgcctctgtgtttatttattgaataaacaaaaTTTTGTCACCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38607 lncRNA upstream 190855 4765864 ~ 4767821 (+) True G26008
TU38569 lncRNA upstream 215073 4730837 ~ 4743603 (+) True G25976
TU38575 lncRNA upstream 267893 4689375 ~ 4690783 (+) True G25981
TU38522 lncRNA upstream 523039 4432605 ~ 4435637 (+) True G25941
TU38521 lncRNA upstream 526718 4431623 ~ 4431958 (+) True G25940
TU38673 lncRNA downstream 16012 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 16012 4981209 ~ 4991489 (+) True G26043
XR_006250776.1 lncRNA downstream 18024 4983221 ~ 4985211 (+) True LOC122343429
XR_006250590.1 lncRNA downstream 20982 4986179 ~ 4988188 (+) True LOC122342533
XR_006250591.1 lncRNA downstream 23970 4989167 ~ 4991312 (+) True LOC122342534
XM_043237834.1 mRNA upstream 13796 4935945 ~ 4944880 (+) True LOC122343397
XM_043237676.1 mRNA upstream 29974 4894882 ~ 4928702 (+) True LOC122343293
XM_043237677.1 mRNA upstream 63941 4889423 ~ 4894735 (+) True LOC122343294
XM_043237678.1 mRNA upstream 63941 4889423 ~ 4894735 (+) False LOC122343294
XM_043237910.1 mRNA upstream 70063 4868022 ~ 4888613 (+) True si:dkeyp-27e10.3
XM_043236024.1 mRNA downstream 88593 5053790 ~ 5068865 (+) True syt10
XM_043236022.1 mRNA downstream 88594 5053791 ~ 5068865 (+) False syt10
XM_043237966.1 mRNA downstream 205553 5170750 ~ 5172410 (+) True ccdc59
XM_043237939.1 mRNA downstream 251262 5216459 ~ 5224944 (+) False cracr2ab
XM_043237941.1 mRNA downstream 251267 5216464 ~ 5224944 (+) True cracr2ab
TU38659 other upstream 15941 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 15941 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 329777 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 329777 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 723432 4232908 ~ 4235244 (+) True G25838
XR_006250627.1 other downstream 389135 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 433683 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 816747 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 885232 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 927788 5892985 ~ 5897771 (+) False LOC122342837

Expression Profile