RNA id: XM_043237826.1


Basic Information

Item Value
RNA id XM_043237826.1
length 2434
RNA type mRNA
GC content 0.45
exon number 15
gene id tmem209
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1726783 ~ 1731685 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGTTTCTGACTTCACGCTCCCTATTTTACCGCGTTATGGAGGGCTGATACCAAGGTACGTGTGGTTTGGTAGAGGATAAAGTGTAGATATGACACCATCAAAGGAAGGCATGACCTCCCTCATCGACAAAACCATAAAGCTGAGGAGGGAGGAACAGGCACGGCAGGTTGTCCTGGCATGGGCCGTGTTGAATATGTCTCTGGCGGGGATGATCTATACTGAGATGTCTGGGAAGCTTCTTAGCAGATACTACAACATAACCTACTGGCCCATCTGGTATATTGagctTGTCTTGGCTTCCCTGTTCAGTCTCAATGCACTTTTTGACTTCTGGAAGTATTTCAAATACACTATGGCCCCATCCACGATCACTGTGAGTCCAGGACAACATCGACTTCTTGGGCTCAAGGGCTCAGGGATTCAAGCCTCTCCACctcagaaagaagaaaagaaggaagCTCCCGTGTCAATCCAGTCATCTCCCCTGCAGGGACAGAATGTACTCAGTTTCAGTCCTGCACGACCCTCAAGCACCAGCCCCAAGTTTTCCCCCAGCTGTGTGTCTGGGTTCAGTCCCCCTCTGAGCAGCCCTTCATCAGCAGGAGGACCCTTCTCACCCTCCATGGCATTCGGCAAGGTGTTAAACTATAGTCCGTCTCCAAGTTCTTCTCCATACCCAGGCAACCTCGGTCCTGCAGAAGGCACCAGTCTCCGCGCTCGGTACCGCACATCTCCTTCAGTCTTTAATTCACCCGGAGGCAAGGAGGACTACATCGATGACCTGAAGACTTTGGAGAAGTTTTTACGtacagaggaagaaaaaagcCACCGCAGTCAGCTGGGGAGTCCAGAGTCAACGTCTCCCAGACACAGTCCATCTTTCTGGAACTACAGTCGTTCGGTGGGAGATTACGCACAGAGCCTGAGGAAGTTTCAGTATCAGCCGGCCTGTCGTTCACAGGCACCCTCTGCCCACAAAGACGACACGGAGCTGGGCTCTAAACAAGCTGCTGAAGAGGTCTGGGCACGAATCACAACAAGTCGTGTGGTGACGGATAGTATCGACAGCTGGACTGCTAAACTGAGAAACTGGATCAATGACACCATTCTAGTTCATCTAGTCAGAGAGATCGACTCCGTGAACAGTCAGCTCAGGAGGATGGGTTGCCCTGAGCTCCAGATCGGAGAGGCCAGCATCAGCAGTCTCAAACAAGCAGCTGTGGTCAAAGCTTCTGCTATCCCCACCCTCAATGCTATCGTACAGTATCTGGACGTCACCCCAAACCAGGAGTATCTCATGGAGAGAATCAAGGAATTAGCCCACAGCGGCTGCATGAGCTCTTTCCGCTGGAACGGAGGAGGAGATCTCAAGAACCGGAAATGGGACACAGACCTTCCGACAGACTCTGCAATCCTGATGCATGTGCTGTGCACATACCTGGACTCCCGGCTCCCTCCACATCCTAAGTACCCTGATGGAAAGACCTTTACGTCTCAGCATTTTATACAAACACCAGATAAACCAGACGTGTCCAATGAGAACCTGTTTTGCATTCATCAAAGTAGCACAAACCCTCCTCATTATCAGCTCGTCTACCAGGGCCACATCTACAGCTTGCCTAAGGGCAGAAATAACTTGTTTCATACCATCCTGATGTTCCTCTACATTATCAAAACCAAGGAGTCTGGCATGCTGGGGAGAGTGAATCTGGGTCTTTCGGGAGTGAATGTACTCTGGATCTTCGGGGAATGAGATGTCACGTTATCAGAAAAGCACTGCACAAGCCTTGGGatgtgaaaaatacttttttttttttttttttttttttttttttttataacattcttGTGATGTTGCATGTTTTTTGAGATGCATTGTACTGTCGCATTACTTGCAACCTTAACGCAAATACAGACaaagcacagaaagtcattttagttgaggaacatttttaaaatttaaacactGAGATATTTATGACTTGAAACTGTCAAAATGGATCTTGTTCCACTGggtttttatacatatttttttgtatttatcataCAAGAAAAACTATAGTTATTCGTGAATGTAAATTAGTTTGAAAGGGTACACactgcaaggtttttttttctaaattacgAAGCAGTTATTGGCAGGTGTTCTTTATGACCTTGTAATGCAGCTATGAACAAGCATAagtcatatttactttttaaatagcaatttggggaaatgtttatttacttgCTCTCAGTGACGggcttttaattcttttattttgacaatataCAGAAGAGCTGGGATGACTAATGATCCTGACCTTGAATGCCAAATTACATATCCGACAAgaaatgttaatgttgtttgtattttatattgtatctGAAGTGAAACTTGAATTGAGCTTCCACTTTTGtcttcaaattaataaattctcagcattgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37284 lncRNA upstream 33441 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 54070 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 169052 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 394987 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 439757 1286612 ~ 1287073 (+) True G24925
XR_006250569.1 lncRNA downstream 52552 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 56946 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 98993 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 168211 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 174145 1905830 ~ 1906106 (+) True G25192
XM_043237827.1 mRNA upstream 509 1717521 ~ 1726321 (+) True ccnd2b
XM_043237840.1 mRNA upstream 60685 1661550 ~ 1666145 (+) True ada2b
XM_043237839.1 mRNA upstream 60685 1661550 ~ 1666145 (+) False ada2b
XM_043237841.1 mRNA upstream 65431 1658354 ~ 1661399 (+) True atp6v1e1b
XM_043236311.1 mRNA upstream 73071 1635180 ~ 1653759 (+) False snap91b
XM_043237824.1 mRNA downstream 470 1732155 ~ 1760369 (+) True ahcyl2b
XM_043237558.1 mRNA downstream 30458 1762143 ~ 1783683 (+) False strip2
XM_043237561.1 mRNA downstream 30489 1762174 ~ 1781910 (+) False strip2
XM_043237556.1 mRNA downstream 30504 1762189 ~ 1783683 (+) True strip2
XM_043237557.1 mRNA downstream 30505 1762190 ~ 1783683 (+) False strip2
TU37269 other upstream 53871 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 435606 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1061300 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1352748 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1353006 373527 ~ 373824 (+) False G24632
TU37230 other downstream 52607 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1383823 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1387844 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1707446 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1709227 3440912 ~ 3441500 (+) True LOC122342809

Expression Profile