RNA id: XM_043237827.1


Basic Information

Item Value
RNA id XM_043237827.1
length 3624
RNA type mRNA
GC content 0.39
exon number 5
gene id ccnd2b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1717521 ~ 1726321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtatttttgatgggTTGAAGAGAGGTTTACTTAAGGATTGGCTAGAATGCCGTGCATTTGCAATGACTGGGCAGGAAGAAGAGAATTTGAGCATTTTTTGCAACGTGAATTGAGCAGGAGGAGGGAGGGACTGACATTGCCTTTTGGGTGGTCATGCAGTAAGAAAAGTTGTTCTGCTTCATCTGTGTCTGTAGCTCAGAAGGAAAGATTTATGCTTGGGATCGCAGCCTCCGTGatgtaaaaagtgaaaaacagtGCAGACGAGTTGTGTTGATGCACAAGGCGTCCTTTTTGCATAGGCACAGCCACATGCAGCTGGCACTGTGAGGTGGTTATATTAGTTAGCATCACCGAGAAAAGCCCAAACATGGAACTTTTTTGCTTGGAAAAGGACGCGGTCACGCGAGCTCAGAGAGATCCCAACATCTTGTGCGATGAAAGAGTATTGCAAAGTCTTTTAACAGTGGAGGACAGATATGTTCCGCAGGGACcctattttaaatgtgtacagAAGGATATTCAGCCTTTTATGAGGCGGATGGTCGCGACGTGGATGTTGGAGGTTTGTGAAGAGGAGAAATGTGAAGAGGATGTCTTTCCCTTGGCTATGAACTACCTGGACAGATTTTTAGCTGCAGTTCCTACGAGAAAATGTTATCTACAGCTCTTAGGGGCTGTGTGTCTTTTCCTGGCTTCAAAATTAAAAGCTTGCCAACCGCTGTCGGCCAGGAAGCTCTGCATGTACACAGACAACTCCATTACATCTCAACAACTGCTGgAGTGGGAGTTGGTGGTTCTTAGTAAATTGAAATGGAACCTGGCTGCCATCACCCCACTTGACTTTATCGAACACATTCTGCACAAATTGCCCTACCCTGAAGACAGACTGACGCTGATCCGCAAACACGCGCAAACCTTCATCGCCCTCTGTGCAACAGATCACAGCTTCACCATGTACCCTCCCTCCATGATCGCCACAGGATGTGTGGGGGCAGCAGTATGTGGCCTTCAGCCTGACCAGAGCGACCAAAATCTGTGGGGGGACAGTCTGACGGAGCTGCTGGCTAAAATCACCCACACTGAGGTGGACTGTCTGAAGTCCTGTCAAGAGCAGATCGAGCAGCTACTGACCAACAGCCTGAAAGAAAGTCAACAAcagcatcagcagcagcaggagggCAGAGCCAGCAGCAAAGGGTTGCAATCGCAAAACATGTCCTGCACCCCTACAGATGTCCGTGACGTCAACTTATGATGCCGGTTTCTACCAAAGATTCAATTATTACTGTTACTGTATTTAAGATTAATTTCAAAGCCACATGGTGATATGCGCGTAACACAAGCTTGATATTTTATAACGGAGGGaaacagctgctgctgctgtctcaTGTCTGCAGGCGGTGGCAATTTAAAACATACTTGAATTAAACTGAATTGGCCTCAAACCATGATTCAATAATGCAGTACGTTGCATATTGCTCAACAAAGAGCATACATCTGTCTTGGCTATCATATGCAActgtgttataattattattataatttatgtggttatttaataattataataataatacctgttattgttcaaaatattatttttatcttacaaaatgtatttgcttagtaattgtcttttttttttttttttttaaatataacataggATGCATGCGATCCCACGATAATGCTATTCTACAGAATTGATAGTAACATCCGTCACTCCTTTCAGTGGGATCTGTTTGCTTATCGTAGAGATAGAAATACAATGATCTGATGAGTTACTTCCGGGTATAAGTAACTTTTATTATAGGGATTATTTACGGTGAATGTTATTGCATGAAATAAGCATATAAGAATATGTTAAACGGTTTCTATCCATGCATAATGGCCATCACAGCTCGCACGACAATTTCAGATGGACACTAAGCATGTAGCAAAAGTGGAGTAAAGGTGAGGTAGGGAAGGAAGGAAAGAGGTGAATGGAAGAATGCGGATGGAAAGTTTTTGCACGTGAAATATGAGTGGTTCCGGAATGCTCTGTAATGATTAAGCATGATGCTTTTTGCTCGTTTGATCTGTTTAAACGCCATCACTTTTTGGGTCAATGACACTTGCTATGCTGGAGGGATTTAATCATTTGGGAGTCTGAAAATCCTCCTCAGCAAAGACACGATACAAATGCACTTTCAGATATCACCTCTCACTGGTTATCCATGGTATACAAGAGGAGGGCGAATCGTTTCtaaagggttttatttttttgcatagtttttcttaagttatttttgttttggggcTGGTTTCCCATATTAGGTGTGCTTTGCGGGtaatagttttaaatttagACCAATAAATTTAGACCAGTAACTGATCCAACAGTCAACTGCCAATAGAAATGGCGAGGTTTGACATGTCAAGATTGGTTGCGTTTTACTTTAGTTGTGTGGAATTCATGTCAATATAGATAGGACATCATCAAATTTCATTAAAtcactattttattttctcaaaatatcagTCATCTACTTGAACGTTTCTCATATATAggaaaaagatattttgaaaaattatgcagttttcttttctatttcttcCTCGGTCTGTTCTTGCACTTTTGGTTTCTCCAGTCAGTGGACCTAAAAGCAACTCAAGAGGTGTGAGGTGTTTGAAAAGTTTACTTCAAATATGTTATGTGTTGAGCTGCCACGGACGTGCCATTCCAACACAACTATGCAAATGAGCTCcgtgttattctttttttttttttttttcaaacaatgttCATTTTCATCGTTCACTTATTTGAACACATTTAAGTTTGTGTGCTATTATATCCTTACGTTCATTTTGTGTTCTTcccattcttttatttttgtgtaagtGTTTGAACTTGTGTTCCAGTGCTgctaaaagaaaaggaaaaaagaaaaaagagctgATGCATAGGCTTGATCTTAAATCCGGTTTCCATGTTGCTGCTATATCACAATTATTGAAcgtgttttcatttctgttttctctttgcaTTTACACTGTCAATCATTTTCACGCATGAAGTGCCTTGGCGTTAACTTGCAGATATTTGCATGAACAGTTTTGcttcatttgtgtttaatgTCATCTAACTTAACTCTTGCCTGAGTTCTTTTTCtagctgtttttctttgtgttatGAAACTCCTTCATcgtttttaaatgatgttcCTGCCCACAGTCACAGTACCTCACAGTAGCCTACTTAAGTCAGAAGTTTATAGAGGAGTAGTTGGATTAAAAAGAGATGTTGAAGTTCCTCAACTAGTTAGTTACCCTACAGGTAAATCCTCCAGGTTTGTTCTTTTAGTAACTTCTCAGATACACACTCACCATACAGCTATAAATGTATTGTCTTACCAGGCGGTGGATGTAAGACCGGGGCAACGTTTagatacaaaatattgtttttaattttgtttgaattCACTTGAAAGAGCCACTCTTTGTTTCACCAACACACCTAAAAATATCCAAAGACATTGCATTTCAGCAATaccctcatttttatttttgccctAGGACACTTACCTCATTTGGACCAATCGgacattcaattaaataaatctcaatttgaaaagtaaaa

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37284 lncRNA upstream 24132 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 44761 1670617 ~ 1672760 (+) False LOC122343488
TU37142 lncRNA upstream 159743 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 385678 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 430448 1286612 ~ 1287073 (+) True G24925
XR_006250569.1 lncRNA downstream 57916 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 62310 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 104357 1830678 ~ 1830968 (+) True G25086
XR_006250555.1 lncRNA downstream 173575 1899896 ~ 1901886 (+) True LOC122342405
TU37447 lncRNA downstream 179509 1905830 ~ 1906106 (+) True G25192
XM_043237840.1 mRNA upstream 51376 1661550 ~ 1666145 (+) True ada2b
XM_043237839.1 mRNA upstream 51376 1661550 ~ 1666145 (+) False ada2b
XM_043237841.1 mRNA upstream 56122 1658354 ~ 1661399 (+) True atp6v1e1b
XM_043236308.1 mRNA upstream 63762 1635179 ~ 1653759 (+) False snap91b
XM_043237825.1 mRNA downstream 462 1726783 ~ 1731685 (+) True tmem209
XM_043237826.1 mRNA downstream 509 1726830 ~ 1731685 (+) False tmem209
XM_043237824.1 mRNA downstream 5834 1732155 ~ 1760369 (+) True ahcyl2b
XM_043237558.1 mRNA downstream 35822 1762143 ~ 1783683 (+) False strip2
XM_043237561.1 mRNA downstream 35853 1762174 ~ 1781910 (+) False strip2
TU37269 other upstream 44562 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 426297 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1051991 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1343439 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1343697 373527 ~ 373824 (+) False G24632
TU37230 other downstream 57971 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1389187 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1393208 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1712810 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1714591 3440912 ~ 3441500 (+) True LOC122342809

Expression Profile