RNA id: XM_043237832.1


Basic Information

Item Value
RNA id XM_043237832.1
length 1210
RNA type mRNA
GC content 0.42
exon number 7
gene id dera
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6275085 ~ 6281017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAATCCCGGAAGACGTATAGTGTCTTAAAGCTGTCAGTGCGCTGCGGTACCACTTGCTTAAATAAACcgattattttctaaattaatttaattctgcAATTTATATTTCATCATGTCAGCTAGAAATCCCGGGATGGATCTTGATCTTGAATGGGTGTCGAAAGTCAGAGTCAACACTCAGGCTGTTCTTAAACGAGCTCAGCAGATCCAGGGACGCAAAGTGGCCAAAAAACAGTGGCAGGCTGCCTGGCTGCTGAAGGCTGTCACCTGTATCGATCTGACGACACTTGCTGGTGACGATACACCTTCCAATGTCCATCGACTCTGTATGAAGGCCACACAGCCGATTCGTCACGATCTGCTGAAGAGCATGGATATGCATGACAAAGGAGTCACGACTGCAGCGGTGTGTGTGTACCCGTCACGAGTGGCTGATGCTGTGAAGTCTCTTAAAGCAGCCAACTCTAGTCTTCCTGTCGCATCTGTGGCCACTGGTTTCCCTGCTGGACAGACACCGTTGAAGACGCGTCTCGCTGAGGTACAGATGGCCGTGGAGGACGGTGCTGCGGAGATAGATATCGTCATAAACCGGACTTTGGCACTCACTGGGCAGTGGACAGCTCTCTACGACGAGATCCGGCAGTTCAGAGAGGCCTGTGGAGATGCCCATATGAAGACCATCCTGGCGGTGGGAGAGCTGGGAACCTTCACGAACGTCTACAAGGCCAGTCTGGTGTCCATGATGGCAGGTGAGAACATTAGGCGTAGAGATCAGAAGTGTAGTTTAGTGTTAAATAGCAGAAATAACATTACTGTAGGAAACTTGTGCAGCCTCGAACTTCATCATAAAAAAgtcttattatttataaaccatTTATTTCTTCATGTTGATATGCACAGAGATGTCATGAGCATTTTGCATCATTATACCTTGAGCCtgattttttcattattcattattgcaaaatatatacgTGTTAGAGGGCAtgggttattattattattattattattattattattattttagccaAATTATATTACCCCCACATATATCAGGACAGTTGTGTCAACctgccttttaaaaaataccagtaataattttaattcagaTCACCGacatctttgttttttaattaaggacatagttattataaatattaggttaagtattcattcatttattttaacatatgtaACTGTTATGTT

Function

GO:

id name namespace
GO:0009264 deoxyribonucleotide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004139 deoxyribose-phosphate aldolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39386 lncRNA downstream 10645 6266832 ~ 6267414 (-) True G26556
TU39377 lncRNA downstream 25411 6207174 ~ 6252648 (-) False arhgef39
TU39371 lncRNA downstream 43121 6186089 ~ 6234938 (-) True G26541
TU39373 lncRNA downstream 70550 6193389 ~ 6207509 (-) False arhgef39
TU39326 lncRNA downstream 114530 6161123 ~ 6163529 (-) False arhgef39
XR_006250660.1 lncRNA upstream 96099 6377116 ~ 6389201 (-) True LOC122342911
TU39723 lncRNA upstream 560957 6841974 ~ 6843849 (-) True G26787
TU39728 lncRNA upstream 564542 6845559 ~ 6908495 (-) True G26790
TU39733 lncRNA upstream 579057 6860074 ~ 6862247 (-) True G26795
TU39736 lncRNA upstream 581706 6862723 ~ 6863382 (-) True G26796
XM_043236375.1 mRNA downstream 20517 6255746 ~ 6257542 (-) True mgst1.2
XM_043236374.1 mRNA downstream 23016 6252769 ~ 6255043 (-) False mgst1.1
XM_043236373.1 mRNA downstream 23024 6252769 ~ 6255035 (-) True mgst1.1
XM_043236360.1 mRNA downstream 96883 6085892 ~ 6181176 (-) False arhgef39
XM_043238009.1 mRNA upstream 431 6281448 ~ 6289610 (-) True helb
XM_043236876.1 mRNA upstream 9083 6290100 ~ 6294999 (-) True irak3
XM_043236878.1 mRNA upstream 9083 6290100 ~ 6294345 (-) False irak3
XM_043236879.1 mRNA upstream 9647 6290664 ~ 6295007 (-) False irak3
XM_043236880.1 mRNA upstream 15201 6296218 ~ 6297948 (-) True b2m
TU39270 other downstream 338060 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 364521 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 424693 5850404 ~ 5853366 (-) True G26414
TU39171 other downstream 541113 5730018 ~ 5736946 (-) False G26408
TU39610 other upstream 69486 6350503 ~ 6361443 (-) True msrb3
TU39663 other upstream 456624 6737641 ~ 6739595 (-) False il22
TU39958 other upstream 1274098 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1966894 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 2179489 8460506 ~ 8468028 (-) True G27232

Expression Profile