RNA id: XM_043237836.1


Basic Information

Item Value
RNA id XM_043237836.1
length 2517
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC122343399
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13692471 ~ 13698715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGAGATCGCTCATTTGGGCATTTTAGTGTCTCCTCTCTTTGTGAACGCACCCTGGACATTTCATCATGACAGCAGATGGTAACCCAGACAGGTTCACTGAGCCCAGACCAATGGAATATGGAGGTCACAATCAGAAAACGCCTCAAACTAAATGTTGTTCTCCAACTCTGAAGATCTTTATTGGTTTACTTGCCTTCTGTTATTTCACAAAAACTCTAACGGGGGCTTACACCAAAAGTACCATCACTCAGATTGAGAGGCGGTTTGAGATCTCAAGCTCTAAGGTTGGCACCATCGATAGCAGCTTTGAAATGGGTAATCTGTTGGTCATTACTTTTGTCAGCTACTTTGGCGCTAAGTTTCACCGACCAAAGATCATTGGATCAGGGGTCCTGTTGATGGGTGTAGGGACACTGTTAATGGCTTTACCTCACTTCATCATGAGCCGATATAAGTATGATACAGCTGCCACCCACATTAATGATCCTTATAATGTCACAGTGAGCTCCACATGCTCATCGGACCACAAGAATCCCGTTCAACAGCTTGATTCTGGGTGTCTAAAAGGGGAAGCGGAAAGCTCACCCATGTGGGTCATTTTACTGTTTGGAAATATTTTGCGTGGCATTGGGGAAGCAAGCATCGGCCCTCTGGGAATGTCATTCATAGACGATTATGCACATCCAGAAAACTCGGCTTTTTATATTGGCTGTCTGCAGACACTAGGAGTGATTGGGCCAATTTTCGGTTACTCGCTTGGATCTTTTTGTGCTAGTCTTTATGTGGACATTGGCTTAGCAAACCAAGAGAGTGTGACCATCACCCCTCAGGACTCTCGCTGGGTTGGGGCCTGGTGGTTGGGTTATGTGCTTTCTGGGCTGTTGACCCTTCTTGCTGCTTTGCCTCTCTGGTTCCTGCCAAGAGCTCTACCTGAATACCCCCAAACCTCTAAACTAGACCACCCCTCaaaccaacacaaacacacgctcagCATTACAGAGATAGCCAAAGATTTTGGACCATCTCTAAAAAGTCTGTTTACCAGTGGGATTTATCTCCTATACATGGTTTTCAATGTGTTGGCATTCAATGCCTTTACCATTTTCATAACATACTCGCCAAAGTATTTGGAGCAGCAGTTTGGACAAAGCGCATCTAAGACCAATTTTCTCATAGGAGTAATGTTTATTCCGTCAGCGGCTCTGGGTATGTTCTTAAGCGGTTGGATCATGAAGAGGTTTAAACTGGATCTGTTGGGAGCTTCAAAACTGTTGTTCTTCTCCTTTGTAATCTCATTGATTTTCAGCATACCATACTTTGCTCTCAGCTGTGAAATCACAGATGTCGCTGGGGTCACAGTGCCCTATcaaagATCTGTTGAAGTTCAAGATGTAAGCATACTCACTTCATGCAATGCTGACTGTGGGTGTCCTGACTTCCAATGGGATCCAGTGTGTGGACAAAATGGAGTGACCTACATCTCTCCATGCCATGCTGGCTGCAAGTCCACTCTGGGTGCAGGACAGAATATGACATTCCACGGCTGTACATGTATCCAGAGCTGGGGACTGACTTCTGGGAACTCCTCAGCCGTGCTCGGACAGTGTCCACGAGAGACTAGCTGCACTACAATGTTCTACATCTTTCTGGCACTGATGTCCCTCGCCTTCTTCGTGTACTGTCTGGGCACCGTTCCCTTCTTCCTCATTTCACTGAGGATTGTGGATCCGTCTCTGAAGGCTCTCTCGGTGGGTGTATTTACGCTAGTTTTAAGACTTTTTGGTGGTATTCCTGCTTCCATTTGCTTTGGTGCTCTGATTGACTTGACCTGCCTGAAATGGGGCCAGAAGAAATGCGGTGGAAGCGGTGCATGCAGAATATACGACACTGAAACTTTCAGGTACCTATTTCTGGGACTGATCGGCTCTCTTAAGATAATTAGCTGTACTATGTTatggattttcattttaaagattaaaaagaacGTACAGAAAGACAAGCAAATATCCAAGGACAACGAACTCCACTATACTGCGCTACGTGATCCAGAACAGgacaatttctaaaataatttataataattttcttttgttcctgtttttttttccattttttttatttctgtcaccAGGTGCCTGAGTATCATCTATTCCATTTATCTGGTGTTCCACTTCCTTCAAAGTTATTTATGGTGATTTCTCACCAGTGCACGAATGTTGTACATGTAAATTTAAGTAGTTTTCACTTGGTTACTTACTGTGTTACcttgattaatattcataataaaacatatttaattttataatgcattactgtGATCGGTGTCATGAAtcaaaaaatgaccaaaagtcACCTTGATACTCTATTTGTGGgtgttttaaattttgtatACTCATGtgaaactgatatttttcacaaaaatttgTTGTGAAACATACTGTGCAACGGTATAAGAAAAAGGCAAACGCTGCGCAGTTGCAAGttctaataaattatataaatgtacaaacaGTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 79700 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 259768 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 259802 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 348214 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 372723 13311873 ~ 13319748 (-) True G28377
TU42310 lncRNA upstream 121981 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 168062 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 170707 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 181316 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 182590 13881305 ~ 13882012 (-) True G28569
XM_043237707.1 mRNA downstream 4831 13683225 ~ 13687640 (-) True LOC122343316
XM_043237997.1 mRNA downstream 13383 13674271 ~ 13679088 (-) True pyroxd1
XM_043237995.1 mRNA downstream 27334 13652525 ~ 13665137 (-) True LOC122343493
XM_043237996.1 mRNA downstream 44422 13635613 ~ 13648049 (-) True slc6a1l
XM_043237931.1 mRNA downstream 179067 13502936 ~ 13513404 (-) False b4galnt3a
XM_043237835.1 mRNA upstream 3668 13702383 ~ 13708079 (-) True LOC122343398
XM_043236233.1 mRNA upstream 10077 13708792 ~ 13717223 (-) False slco1e1
XM_043236234.1 mRNA upstream 10077 13708792 ~ 13717095 (-) True slco1e1
XM_043236235.1 mRNA upstream 10077 13708792 ~ 13716767 (-) False slco1e1
XM_043237143.1 mRNA upstream 19889 13718604 ~ 13729434 (-) True slco1d1
TU42098 other downstream 269932 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 330533 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 330533 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 330533 13324525 ~ 13361938 (-) False tmcc3
TU41786 other downstream 1203315 12482102 ~ 12489156 (-) False cpm
XR_006250741.1 other upstream 116859 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 276642 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 470707 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 997145 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 1109882 14808597 ~ 14810137 (-) False LOC122342642

Expression Profile