RNA id: XM_043237841.1


Basic Information

Item Value
RNA id XM_043237841.1
length 1458
RNA type mRNA
GC content 0.43
exon number 9
gene id atp6v1e1b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1658354 ~ 1661399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCATTGACTGAGAGTCAGCTGATCCTTCTAGTCTATTTTCACGACTCTGCTACGGTCGACCCTTCTTGTCATTTTTGTGCGTTTTTAAATCTGTAGGCTTTTcgcaaatatttcaaaaaatccATTTACTCAGACGTCTTTCCGTCGCCGTGACACGAGCCTTTTCAGCCGGTGGAGTTTAATATCCTcttacagcagcagcagcagtcatGGCGCTCAGTGATGCCGACGTCCAGAAGCAGATCAAGCACATGATGGCTTTCATTGAGCAGGAGGCCAATGAAAAAGCAGAGGAGATCGATGCAAagGCAGAGGAGGAGTTCAACATTGAGAAAGGCCGGCTGGTCCAGACTCAGCGTCTGAAGATTATGGAGTATTATGAGAAGAAGGAGAAACAGATTGAACAgcaaaagaaaatTCAAATGTCCAACCTAATGAACCAGGCCAGACTGAAGGTCCTGAAGGCCCGTGATGACATGATTTCGGATTTGCTAAACGATGCACGTCAGCGACTAGCGAATGTAGCCAGAGATCCATCCAGATATGCGGCTCTGATGGATGGACTTGTCCTGCAGGGTTTTTACCAGCTCCTGGAACCCAAAGTGACCATCCGTTGCCGCAAACAGGATGTGGGCATATTGCAGGCTgctgtgcaaaaaaacattcccATTTACAAGGCCTCAGTGAAGGACAATCTTGAAGTGCGCATTGACCAGGAGAACTTCCTCTCTCCAGAAATctCTGGTGGTATCGAGCTGTATAATGCTGATGGGAAGATCAAAGTGTCTAACACTCTGGAGAGCAGGCTGGACCTCATAGCACAACAGATGATGCCTGAAATCCGCGTCGCTCTATTCGGTGCAAACCAGAACCGCAAGTTTATGGACTAATCCTCACCCGCACAAAACCACGGCAGAACACCATTGTTTGatgttgtacttttatttttattctgatgTTAAAGAATTCATTCCTGTGTttgtctgtatttaaaaaaaatatcatgtgtatgtgtgtgttctgtatatGGTGATTCATTATTGCTGTAAAAAGGATCAAAATAGTGTATTAATTGGCTGCTAAATCTCTGGTCCGTAACATCTCATGTGTTTATTTCTGAGTGCAGCTGTAATATAACATGGTTATGTTTACAGAAATACCTGAGTGAGTTCGGTCTTAAGCTGAAATTCCACGATGGTTTGCGAACTCACCCATTTTGTGGCTGTGGAGGAGAAGACGGACCCATCTTGAACATCCcctagaaaaacaaaatggttGCACAGACTTAAAAATGACAACGTGTTTCATTATTTCTGttgaatttttatttgctgttctTCCTATGGTGCAGAGCATGACCTGTATGTCACAAGCAATCGTGTCTGTTAATGCTGCAAAGATTATATTGATgtggaaattatatataatgaaaaaaacaataccaaACAGATCTTCAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37142 lncRNA upstream 100576 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 326511 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 371281 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 409185 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 530974 1112895 ~ 1127380 (+) True LOC122342413
XR_006250791.1 lncRNA downstream 9218 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 27579 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 122838 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 127232 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 169279 1830678 ~ 1830968 (+) True G25086
XM_043236313.1 mRNA upstream 4595 1635177 ~ 1653759 (+) True snap91b
XM_043236308.1 mRNA upstream 4595 1635179 ~ 1653759 (+) False snap91b
XM_043236309.1 mRNA upstream 4595 1635180 ~ 1653759 (+) False snap91b
XM_043236310.1 mRNA upstream 4595 1635180 ~ 1653759 (+) False snap91b
XM_043236311.1 mRNA upstream 4595 1635180 ~ 1653759 (+) False snap91b
XM_043237840.1 mRNA downstream 151 1661550 ~ 1666145 (+) True ada2b
XM_043237839.1 mRNA downstream 151 1661550 ~ 1666145 (+) False ada2b
XM_043237827.1 mRNA downstream 56122 1717521 ~ 1726321 (+) True ccnd2b
XM_043237825.1 mRNA downstream 65384 1726783 ~ 1731685 (+) True tmem209
XM_043237826.1 mRNA downstream 65431 1726830 ~ 1731685 (+) False tmem209
TU37077 other upstream 367130 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 992824 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1284272 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1284530 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1363285 293235 ~ 295069 (+) True G24609
TU37269 other downstream 9113 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 122893 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1454109 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1458130 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1777732 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile