RNA id: XM_043237848.1


Basic Information

Item Value
RNA id XM_043237848.1
length 2308
RNA type mRNA
GC content 0.41
exon number 9
gene id tspan11
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5239403 ~ 5254016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGCTGTAGTTACATTTCCTCCTCACATCCTGCGCTGACCCTCCGATACCCCGCCGACTGGACACGCGCCTGCGGAGCTACAAGCCTCGCTGCCCGGCCGAAAAACACGCTTATCTACCGTCAAGGAACGATGGGCAGCTTGTACAAGGATGAGCAGGACGACTGGATCACGGTGTGTCTCAAGTACCTCCTCTTCGTTTTCAACTTCCTGTTTTGGATGGGCGGCGGGGTTGTGATGGGTGTCGGGATCTGGACGCTGGTTGATAAAGGAGAGTACCTGAGCCTGCTGGCCTCCAGTACATTCGCCGTGTCCGCCTACATCCTGATCCTGGCGGGTGGGCTGGTGATGGTCACCGGGTTCTTGGGCTGCTGTGCCGTCATACGTGAGCAGAGGAGCTGTCTGTCCACGTACTTCTCCTGTCTGCTTCTGATCTTCCTAATTGAGCTGGTGGCTGGGGTTTTGGCCTACGTTTATTACCAGGCTCTGAGTGAAGAGCTGAAGCAGCACTTGAGCAAGACGATGACGGAGAACTATGCCCAACCTGGAAAAGACAGCATCACTCAATCTGTGGACAGACTACAGCAGGATTTCAAGTGCTGTGGGAGCAACAactcctctgactggacgcaCAGCGTGTACATCATGTCCCAAAATGCAGAGAAGCGATTGGTCCCTGACAGCTGCTGTAAAACCATCACccatcagtgtggaaagagagACCACCCCTCGAACATCTACAAGGTGGAGGGCGGATGTATCACTAAACTGGAGCAGTTCCTGGCAGATCACTTGCTCATTATTGGTGCTGTGGGGATAGGCGTGGCCTGTCTACAGcTGGTAGGAGCAGTATTGACTGCCTGCTTTATTTATCTGCTTTataaagaagaggaagaagactTTTCTGATGTTTGATTGGCTAGTGCCAATGTTTGACTCCTGAAGTGATCAGAAGatctGTGGAATGGTGTTCACCTGTTGCCTGCACAGGCGAATTAAGCTGGACCCTTACTGACTGAGAAACTGACCTTTATGACACTTTAAACACGGCCTTACTACTCTGTCCATTTTTAACTGCACGACCAAattcatttgcattaatataagggctttattattttttagacaAATATTGCTGATGTTTTTGCCTCTTTATGATCCTAAAAGTCTAGAAAGGTGTGGGATATTGCCCTATAGTCATTtagataaagataaagaaatcacttttatactttgagtaaattataatatatcaaaatatttttttattaaccacATATTCACTTTAAATAGCTGGTATTAAATGTATGCAATGTGCTGCTAGATCTCAAGCAGGTGTGGGAACCTGCTCGTAGGCACAAAATACACTGGACCAACATCAAGAccattcattattatattttaataataacatttatgaaGCTTGTTGAAAGATCTCTGTTTGgcacatttcattattattctgGGAACAAATACCATTATGTCCATTTCTGATATATTATTGGTGCAGAAACTATATTGACAAAAATCGCAAgtaacattgaattaaacattactTTTTGAAGTAGAACACATGaagtaatattttctttacacGTACACTTTTAAATTGAAGCAATTACTATTTTGTCATCgtattttaaattctgtcacACTTCCTGTTAAATATTATCATTCACAGAAAAGATAAAGCTGCTTTTGAGGCTAAATGATTTTCGCTTAGATGGATTGGCAGAATATTACgtgtattttaaaaggttttattgaACCGACGAACTCCCACTTAGGGCCATGCCATGAAACGTTCAGATGATTGAAGGGAAAGAACGAGCACCATTCCATTGCATTGCAACACACGAGTCACAGCTGCAAAATCTTAATGTAGTTGCCACAGCAACGTCAGCCATTGAAATCCAATGtcatttggggaaaaaacatGGTTAGAAAAAGATTTAATGTAACTTTCTTGTTTTCCGTTGTACTGAGTACCGTCTGTAACCCAATTGCTTTATGCTTTATGACAGatgatgcatattttaaaagcattgtgCAAATAAACAATCTCTCATCTGAGCTGCACGTAAGTCTGCAGGTTGTGATGTGCATTTAATGATCTCAGTAGTTGATCTAATAGATGTAATCTTTCATTTAAACACTGCTATGTATTTGTAGAAGGaatgtgtatgtattttcatAAGGAATTTACTGTAGCATCTTTTGTGGGCAGTAGATACTGAAACAGctgtatgtttattaatttttttatatatatatatatatatacgtttgaaataaacttattttgttGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17352 TSPAN11; tetraspanin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 34098 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 116649 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 121161 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 127774 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 135062 5104031 ~ 5104341 (+) True G26145
TU39034 lncRNA downstream 251056 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 255287 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 259540 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 260336 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 264917 5518933 ~ 5519157 (+) True G26333
XM_043237939.1 mRNA upstream 14459 5216459 ~ 5224944 (+) False cracr2ab
XM_043237941.1 mRNA upstream 14459 5216464 ~ 5224944 (+) True cracr2ab
XM_043237940.1 mRNA upstream 14459 5216918 ~ 5224944 (+) False cracr2ab
XM_043237966.1 mRNA upstream 66993 5170750 ~ 5172410 (+) True ccdc59
XM_043236024.1 mRNA upstream 170538 5053790 ~ 5068865 (+) True syt10
XM_043236733.1 mRNA downstream 2388 5256404 ~ 5344872 (+) False sema3aa
XM_043236732.1 mRNA downstream 60008 5314024 ~ 5344872 (+) True sema3aa
XM_043236680.1 mRNA downstream 100316 5354332 ~ 5391479 (+) False pcloa
XM_043236673.1 mRNA downstream 100327 5354343 ~ 5397886 (+) True pcloa
XM_043236675.1 mRNA downstream 100327 5354343 ~ 5397886 (+) False pcloa
TU38659 other upstream 296668 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 296668 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 610504 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 610504 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 1004159 4232908 ~ 4235244 (+) True G25838
XR_006250627.1 other downstream 100316 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 144864 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 527928 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 596413 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 638969 5892985 ~ 5897771 (+) False LOC122342837

Expression Profile