RNA id: XM_043237854.1


Basic Information

Item Value
RNA id XM_043237854.1
length 2024
RNA type mRNA
GC content 0.52
exon number 8
gene id tfec
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2783461 ~ 2823147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCAGAAGGGGGAAGTCTGGGATTGGCCGCTTCACGCAAACAGAACTGGGCGGTCCCAGCGAATTAGCGATATAGGCGAAAGACCTCGGCCCTGTGGTGATCAAACCTGTCAGATCAGTAATCTCTCCACTCGAGGTGATTACTACAACCTGCAATAAAAAGGAAAGGCCTGGCTTTACTGCTAATTAGGTCGCCGAGATCCTCCTGCTTGCTTATAAAGACCGGACAGGGACGAGAGGGGACAGTCACTCGCTTTCCTCTGCACAGCTTGGGATCCCACTTTAGTGGACGTACAGGGATCGAGAATGCCACATTTAACTGACTGTAGTTTCTACAAGATGAGAGACGGAGCTCGAGTTTCCAATGTTCAAAGTCACCTGGAGAACTCCAAGTACCACCTCCACCAGACTCAGGCCCAGCAGGTCAAGCAGTACCTAACTTTGGGCAGCAAGCTTGCCAGCCAGGCACACCAAGTGGGCCATCCTCACCCGGGCCAGGCCCTGGGAACGGTGCCCGTCATGCGCAACGGACACATGCCGCCCGTGAGCGACAGCAGCACGCCAGGAAGCCCCGTCACCCTGCTCACGCTGGCCAACAATCACGACAGCGAGtttccaATGGATGAAGTTATTGATGATCTTATTAGTCTTGAAACCGGGTTCAAAGATGGAGGTTTGGACTGTATGGAGCCAGGCATCATGATGCAAAATAACGTGTCGCTGAACAACAGCATGCTGGAGGTGTACGGCGGTGACCAAGAACTTGACACCAGAGTCCTGGCCAAAGAACGACAGAAAAAAGACAACCACAATCTAATCGAAAGACGACGGCGATACAACATCAACTACAGGATCAAGGAGCTGGGGACGCTGATACCGAAGTCAAACGACCCTGATATGCGCTGGAACAAAGGGACGATCCTCAAGGCCTCGGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAGCACGCCCGTGATCTCGAGAGCCGACAGAAGAAACTAGAACAGGCCAACAGAAGACTCCTGCTACGAATCCAGGAACTGGAAATCCAGGCTCGCGCTCACGGTTTGCCCAGTATGGCTGCTTCTATGGGAGCTGCCGAACTTTCATCCCATCTCttaaagcagcagcagcagcagcaccagGCAGTCACACCGGCCCCGCCGAGCACCCAGGCCCCGCAGCAGCCGGGCCAGCCACCCATCTACACTCAGGAGGACGTGAGTAACCCGGAGTACACCCAGCGGACACCCTTACCGGCGGCGATGGCCGCGGGGAACGCCGGAGAACAGACCGACGGCTCCAACACCTACTCAGATCCTCTCTCCCACTTCACCGACTTCTTCTGCAACACCTTGAAAGAAGAGCACCGGCTGGACGAGATCCTCATGGACGACCCTCTCTCGCCCTTCGGGACAGACCCTCTGCTCTCCGCCGGATCGCCCGCCGCGTCCAAAGGGAGCAGCCGCAGGAGCAGCTTCAGCTCAGAGGAAGCCGACGAGCTCTGACCGTCCAGAAGCTGACCCGTAACACTGTGTAACTGACCTCCCGTTTCCATTGGATTACAAAGACCACGAGAGTCTTACTCCGATGTTGAGTCAGACACATCAAAAAAGGGAGATTGACTATTTGATCTACTGACACCGACCCAAAAGACTGTCTATACAGCAATAACACTGGCTACGTATGATGACTGGctcacaaaatgtatatttctgaaACTTAATGGCATTGTTGAGAGGGACGGCTGTAGAGAGCGCCTTATTCACAACAGACTGACTTTATTACCACTGAGACCAGAAGCAATGCAGTCGCTATTATGCTATGCAAAAAGCCCTAATGCGTCTTTCTATATTtcatacatactgtatttttccaGAAACATACTgttcatgtatttatgttttaatctgtgtattcttaaaaaaacccacaaaaaaactttatctaacatgttactttttatatataactccAGGGGTGTGGGGAAACACAATAAACCCCTTTTTCATAAACTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250774.1 lncRNA downstream 245455 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 246003 2535072 ~ 2537458 (-) False LOC122343423
TU37702 lncRNA downstream 310427 2472284 ~ 2473034 (-) False LOC122342907
XR_006250773.1 lncRNA downstream 494342 2279226 ~ 2289119 (-) True LOC122343417
TU37692 lncRNA downstream 499683 2283285 ~ 2283778 (-) True G25362
TU38074 lncRNA upstream 185791 2980159 ~ 2996458 (-) True G25625
TU38062 lncRNA upstream 212402 3006770 ~ 3012214 (-) True ccdc3a
XR_006250573.1 lncRNA upstream 322036 3116404 ~ 3117297 (-) True LOC122342459
XR_006250572.1 lncRNA upstream 323111 3117479 ~ 3119550 (-) True LOC122342458
TU38132 lncRNA upstream 586290 3380658 ~ 3676399 (-) True G25673
XM_043237100.1 mRNA downstream 279248 2499774 ~ 2504213 (-) True ppp1r3aa
XM_043237099.1 mRNA downstream 279251 2499774 ~ 2504210 (-) False ppp1r3aa
XM_043237102.1 mRNA downstream 310393 2472292 ~ 2473068 (-) True LOC122342907
XM_043236237.1 mRNA downstream 312189 2467087 ~ 2471272 (-) True gpr85
XM_043237098.1 mRNA downstream 359998 2415666 ~ 2423463 (-) True tmem168a
XM_043237897.1 mRNA upstream 41480 2835848 ~ 2845005 (-) True lta4h
XM_043236335.1 mRNA upstream 68772 2863140 ~ 2904289 (-) True cdk17
XM_043236333.1 mRNA upstream 68772 2863140 ~ 2904143 (-) False cdk17
XM_043236334.1 mRNA upstream 68772 2863140 ~ 2904138 (-) False cdk17
XM_043237074.1 mRNA upstream 133437 2927805 ~ 2934976 (-) False mcm10
XR_006250644.1 other downstream 407745 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 407745 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 694882 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 880894 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 1128654 1653591 ~ 1654807 (-) False ccdc167
TU38086 other upstream 226694 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 740469 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 753858 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 806632 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 807990 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile