RNA id: XM_043237857.1


Basic Information

Item Value
RNA id XM_043237857.1
length 2732
RNA type mRNA
GC content 0.46
exon number 4
gene id lmod2b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1273306 ~ 1277391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTATGTGGTATTTTCGGCACATATGAAAACACTAAAAGCACCTACAAGTTTCCTGGCTTGTCCAATTCTTAACATACGAAATTACTTGAGGATAACATTTATATCAGTAACACTAAATTGTACCTGTAATGTTACAATTTGACACACTGTTGCAAAATCAAGCCGTTCTGTGCAGcgataacatttttattttaacatatgaCACCAGTAAACACAGATATTTGGAGTTTAAGTGCTTGAAAACATAAGTATTTACCACCTTGCTGGAAAAAACTACTTGCTATTATAAGGACATTACCATTTCTCTCTAAGCCATCTCCTCAGAGTCTGTCTGCTTATTTTGGACATGAACAATGCAGTCAGCATTCATTAACAGGCCTCGCTCTGGCCACGTTGTGAGCTCACATGCTTTTTGCAGCTCTGTCTGATTGACTCCTGCCTCCCAAAAAAGCAACGGCATCATGGGCTGGGGCTTTGTACCACGTCTCTCTGATCCTGCTCTTAAGACCCCTCCAGCTGCCCATCGCAGTAGATGAGCACTCACTCTCACTTACACCACTCGAAAGATCCCAGAACTCTATCTGATGCACCAATAGTGAGACAAAACGAAGACTTTAAGACTCTGGAAGACTACCGAGAGGCCATGAGTACATTTGGCTACCGGCGGGAACTGAGTAAGTACGAAGATTTGGATGAAGATGAGCTGTTGGCCTCGCTGACTGCTGAGGAGCTCCAGGAGCTAGAGAAGGAGTTGGCTGATATTGACCCAGACGACAATCTTCCCATCGGACTGCGACAGAGAGATCAGACAGCTAAGACTCCTACTGGAACATTCAGCAGGGAAGCTCTCATGAGATACTGGGAAAATGAGACGCAAAAACTgttggaggaggagaggacgagtCCTAGACAGAAAGATGAAAACAGCAGGGAAGAGGAAGAATGCATGACAGagagtgacactgaagaatttGAGGATGAAAAAGATGAGGATGAAGAgtgtgagaaaaacacagaaaaatgttGTGAAGTTGAAGACCAAGAAGAGGAAAGTGAAACAGAGGAGCCGGTAACAGAAGAGGAGGAggtagaagaagaagaggaagaggaggaggaggaggaggaggaagaagaagaagaagaacggAACAGTCCTAAAATGGCACAGACGCTGGATTGCAGCACTCACCCTCAGAAGTGTTGGTCTTCCAATGGTCAGTCCAATCTGAGACAGGCAGAGCCTGTAAGACGACACTCTCCACTGATGACAGAACCAAAAGTTCAAGCTCAGGAGCCCAGTCGAATGTCAGGAAACCCTACTGTGGTGGATGATGTTCTGGAAAAGATCCTCAACAATGACCCAGATACCACAGAGGTCAACCTCAACAACATTGAAAACATCTCCCAAGACACTCTTATCCGTTTTGCCGAAGCTTTGTGTTCTAACACACATGTACATTTCTTTAGCTTTGCCAACACACATGCAGACGACCAGGTGGCTTTCGCCACTGCCAAGATGCTGAGAGAAAACAGCAACATCACGAATCTTAACATCGAGTCCAACTTTATTACAGGGAAGGGTATCCTGGCACTGGTGCAAGCCCTCACCCGAAACAGTGCCCTTACAGAAATGCGATTTCACAACCAGAGGCACATTTGTGGAGGTCAGGTGGAAATGGAGATTGTTAAGTTACTGAGGGAGAATACAACGCTGATAAAGTTGGGTTACCAGTTCGACCTTCCAGGCCCTCGTATAAGCATGACCACCATTCTTACCCGCAACCAAGACCTCCAGAGACAAAAGAGAATGCAGGAACTGCGTCAACAGCAAGGAGGTGTAGCGACACCAACGAACCCAAGAACGGTCGCCCTTCAGAAGACCGCCTCTTCTCCTTGCGGCTCCCCTCGGAGTTCACCATGGTCATCTCCAAAGTTACCACATATTGATATGGCAAAGAAGAACGCTCTTCCTGCACCTCCccctccaccaccaccacctcctccaccGCCTCCACCACCCAAGGCCTTCATCTCAGAGAAGAAGGCTCCCACCAGAATGATCGCAGAAGTCATCAAACTGCATGAGGGGACATCCAAGAAACAGCAGCATAGGTCCACCAAATCTAAACCCAAGAAGGGCAAAAAAGGGGCTGCAAAGCAAACAGAGACTGACAGCATATTAAAGGAACTGAAGAACGCTCTGAGGCCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAACGCTGTGCCCATGATGAACTCATGGCAGCCATCAGAGGCAGCAACATCAAAAATCTCAAAAGGGTGGAGGTTCCCAAGTATCTTCGGTAACCGGGCTTTCCGGATCTCCAGAGCATCATCTGCAAAAAACATCTGGAAATACAGATACTGTGTGCGCTTTCCTCAAAAATCACACCAACCTTCAGAGCAATTCTGGTTAATGCAGGTGTTTGGTGAGTTTGCATTGAATGTTCAAAGACAGCGGCACAACAGTCTAAATGTCCAGTCGATCACAACAGGACCTGTTTTGGGAACGACCTGGATAATTGCACCGTGTTCATTTTTTAGTAATTAGCGGTAGCTCCTGCTGTTGTTGTGATTGtactttcatgttttttcattgttaatgaTTTTTAACACTACTTCATGcctgtataaaatgtaaatatttgatgatttaaaatggattaaattgcattaattcaATAACCGGAGGAAATAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37063 lncRNA downstream 20727 1250932 ~ 1252579 (-) True G24917
XR_006250762.1 lncRNA downstream 141271 1130534 ~ 1132035 (-) True LOC122343365
TU37028 lncRNA downstream 141794 1130346 ~ 1131512 (-) False LOC122343365
TU37000 lncRNA downstream 204407 1068340 ~ 1068899 (-) True G24874
TU36996 lncRNA downstream 303955 968474 ~ 969351 (-) True G24870
TU37073 lncRNA upstream 7814 1285205 ~ 1285466 (-) True G24924
TU37075 lncRNA upstream 9168 1286559 ~ 1287065 (-) True G24926
TU37076 lncRNA upstream 9865 1287256 ~ 1287737 (-) True G24927
TU37149 lncRNA upstream 11923 1289314 ~ 1292280 (-) False ptprz1b
XR_006250581.1 lncRNA upstream 82645 1360036 ~ 1361863 (-) True LOC122342498
XM_043236182.1 mRNA downstream 148182 1122667 ~ 1125124 (-) False LOC122342412
XM_043236184.1 mRNA downstream 148206 1122667 ~ 1125100 (-) False LOC122342412
XM_043236183.1 mRNA downstream 148244 1122667 ~ 1125062 (-) True LOC122342412
XM_043236181.1 mRNA downstream 152648 1115391 ~ 1120658 (-) True LOC122342410
XM_043236180.1 mRNA downstream 152650 1118693 ~ 1120656 (-) False LOC122342410
XM_043237858.1 mRNA upstream 619 1278010 ~ 1281707 (-) True asb15b
XM_043236819.1 mRNA upstream 12535 1289926 ~ 1323397 (-) False ptprz1b
XM_043236818.1 mRNA upstream 12535 1289926 ~ 1323397 (-) False ptprz1b
XM_043236817.1 mRNA upstream 12535 1289926 ~ 1323396 (-) False ptprz1b
XM_043236816.1 mRNA upstream 12535 1289926 ~ 1323396 (-) False ptprz1b
TU37001 other downstream 203210 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 340198 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1082064 186460 ~ 191242 (-) True G24708
TU36763 other downstream 1199820 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 1239390 28072 ~ 33916 (-) False LOC122343420
XR_006250650.1 other upstream 331969 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 331969 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 376200 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 624452 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 765562 2042953 ~ 2088579 (-) True cald1a

Expression Profile