RNA id: XM_043237863.1


Basic Information

Item Value
RNA id XM_043237863.1
length 3808
RNA type mRNA
GC content 0.53
exon number 14
gene id iqsec3a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13535124 ~ 13632058 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTTTAAATTGATGTCACTATTGGAAAGTGTGTACTGCATGCAAACACACTTCTCTGTGATTGGTCAGGGCGTTGACATCATCACCCTCTGTAGCTCCTCCCCCAGTCTCCCCTGCATCAGGACCATCACTCGCATCCTTAGAGCATCAGCACGCCACAGAGCATTCTCTGCGTCCAGAAGACTCCCACTCCATCCTGATACAGCAGGCTTTGCAGCTTTGAGATTACAGTAATGGAGAGCTTGCTGGATAACCCAATGAAAGCCGTGCTTTACCTAAAAGAACTGACCACCATTGTGCAAAACCAGCAAAGTCTGATTCAAACCCAGCGGCAGCGCATCGACGAGCTGGAGAGGAAGGTTGAGGATCTGATCGGCGAGAACCGTCAGCTGAGAGATCCGCATCAGTATCACCACCATCATCcgcaccaccaccaccacccatCCCCGCGGACCAGCAGCCCTCAGCCGGCCGCTCACCCGCACCAGCATCCGGCGACTCACGGTCAGAGCCAGCCGCAGCAGCATCCGTCCAAACAGCCGCAGCATCCCCCGGCGGCTCCCATCCATCACCCGCAGCATCTGCAGCTCGTACCTACGTCCCCACCGACTCTCAAAGCGACCCAGTCCAGCCCGGAGTCCGCGGAGGACGAGAAGAGGAGCCCGTCTTGCAAGTCCCTGGTTCCGCAGACTCCTTCGACGTTGTGCCGGTCCGTCGGACTCGCGAGGAAACCGGAGAACCAGACGGTTCTACACCAGTTCTGCTGTCCCGCTCCAGACGCCCCTGAGTCTGACTCTCAGGCCTGTGTACCCAGTGAAGAGCCACCCCCTCCTTCTCCCATTGCAACTCCATCACCTGCTGCATCGCCATCACCTGGGGTGACTTCCACCAATGCCACCCAGCCCGAGGTCCAGGTGGCACCTCAGGTTGCAGAGAGCACCGTGAAATCGGTCGATTCAGGAGGGGGAGATGAGGATCGAGATGGAGGTGAAGCGCAAGAGAGTGCAGAAGTGGAGAAGGAAGAGGCAAGCGTACAAGAGATTGAACAGGAGGAAGAAAAACCCCAGGCTCAACCACCACAACCAGTGCAGGAAGAGGTGAAGAAGGAGACAGAGGAGCAGGAAAAGGAAACAGCAAGTACGGGGGGCACAGGAAGGAGGCCAAGCTTGCATCACACTGCTTCGCCAATCAGAGTACAGAGGAATGGAGCGTGCAGCCACTCCACCACCTCCGACTATGAACTCTCGCTCGACCTCAAAAACAAGCAGATCGAAATGTTAGAGCACAAATATGGGGGCCACCTCATCTCACGCCGTGCTGCTTGCAAGATCCAGACGGCCTTTCGCCAGTATCAGCTCAGCAAAAACTTTGAGAAGATCCGAAACTCCCTCCTTGAAAGTCGTTTGCCACGCCGTATCTCCCTGCGAAAAGTACGAGTGCAAAATACAGAGGGTATCTCAGCTGAACGGGCACTGGCTGAAGGCTGTAATCTGGCAAGTATCCCCCTTGTTCGGTCCCCGTCCCTGCCCACCACGGTAGGTGGCTCCCTCACTGACCTCGAAGATTCATTCAATGAGCAAGTCCAGTCTCTTGCCAAATCCATTGATGATGCACTTAGCAACTGGAGCATGAAGACCATGTGTTCACTCCAAGAAGGTGGCACCTACCAATTTAGCTCAGAGGCCTTTAGTACAGCTGGTGGCAAAACTGGGTTGGCAGGAACAGTCCGAGAAGGTGGCCCCATGGACCCTGCCACATTTCATAGCGGAACAGGCCAAGTAGACAATTCTGAGAACATAGCCCGAAGTGCCAGCAAGCTGATGATGGCCTTCCGGGATGTGACCGTGCAAATCGACAGCAAAAACTTTCACGTGTCCTCTTCCGTTATGGAGTCCTCCACTTCTGTTTCTCTCGGTAATTGTGTCCAGCAGGGGGCCATAATTACTGAGAGCCCACAGCAACCTCCAGTCATTGATGCAAAGGAACAACCTCAACAAGTACCGCCACCACCATCTCCACAGGATCTAGTTCCTCCACCCCTAGAGCAGGATGCTGAGGAAATACCAGATGGCGATTTCCCAGCTCCTCCACCAAGTGAGGAGGAGCTTGGGGAGGATCTTCCACCTCTGGTCTTGGAGAAACAGGATGTCCCAGAAACAGCAATTCCAGTAGAGACAGCAATAACCTCTGAAACCTTGTCTCCACCCGAAGTTGCAGAGACTCCTGTCACCCCAATCGTAGAAGTTTTGGAAGCTAAGCGAAGTGAGTCAGATACAGCGGACAACAGCTCAGAGCAGATGAGTAGCAGCAGTACATCCACATCAGCTCGGTCGGCTTCTGAGGTCTCGTCCAAAGAAGCTTTACAGGCCATGATTCTTAGCTTGCCCCGATACCACTGCGAAAACCCAACCAGTTGCAAATCTCCTACCCTCTCCACTGACGTCATGCGAAAACGCCTATATCGCATTGGCCTCAACCTCTTCAACATAAATCCAGACAAGGGCCTCCAGTTTCTCATCTCTCGTGGGTTCATTCCGGATACGCCTATAGGTGTGGCACACTTCCTGCTCCAGAGGAAGGGGCTGAGCCGACAGATGATCGGAGAGTTTCTTGGCAACAGCAAGAAGCCGTTTAACAGAGATGTGTTAGACTGTGTGGTGGATGAGATGGATTTCTCGGGGATGGAGTTGGATGAGGCTCTGAGGAAGTTTCAGGCTCATATCCGTGTGCAAGGCGAAGCGCAGAAAGTGGAGAGACTGATAGAGGCATTCAGCCAGCGTTACTGTATGTGTAACCCAGACGTGGTGCAGCAGTTCCACAATCCTGACACAATCTTCATCCTCGCATTTGCCATCATCCTCCTCAACACGGACATGTACAGTCCCAACATCAAACCCGACCGTAAAATGATGCTAGAAGACTTCATCCGCAACCTGAGAGatgtgtgtttttatttagggGTTGATGATGGTGCAGATATTCCACGAGATATGGTAGTGGGAATATATGAGCGCATTCAGCTGAGGGAATTACGATCGAATGAAGACCACGTCACTTACGTCACCAAGGTGGAGCAAAGCATTGTGGGAATGAAATCGGTTCTGTCAGTGCCTCACAGGAGACTGGTTTGCTGCAGTCGGCTGTTTGAAGTGACTGACATCAACAAAGCCCAGAAGCAAGCTGCTCACCAGAGAGAGGTCTTCCTCTTCAACGACCTACTTGTGATTTTAAAATTGTGTCCAAAGAAGAAGAGTTCGGCTGCGTACACCTTTTGCAAGGCCATGGGTCTGCTGGGCATGCAGTTCCACCTGTTTGAAAACGAATACTATCCTCACGCCATCACTATTGTGTCTCCGTGTTCGGGCTCTGATAAGAAGCAGGTGTTGAATTTCTGTGCTCAGAGCGCAGAGGAGCTGCTCAAGTTCGTAGAGGACCTGAAGGAGTCCATCGCCGAGGTGTCAGAGATGGAACAGATACGCATTGAATGGGAGTTGGAAAAACAACAGGGAGCCAAAACCCACTCCATTAAGAACAACGGGACCCAGCTTGAGTTGAGGGGAAGACAAGGTTCTCCTTCAGgcaaacaggaaatgaacaCGTCACAGAGCGGACACAATGCAGTAGAGGCTTCAGACGTACCAGCTCAACGCAGCACCGCCGAGCCCTGAGAGCGCCGCCCTTCTCAACCACCAGAGGGAGCTCTTCCAGCAGCCTCCGTTGCAACGTGCCAGCCCCACACCCTCACACTCCTACCAGCCCGTGGCCCTGGCCGAGATACGACCCGACACCCTCATCCAGTGCCAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250763.1 lncRNA upstream 14667 13516630 ~ 13520457 (+) True LOC122343375
TU41976 lncRNA upstream 21531 13510856 ~ 13513593 (+) True G28312
TU41953 lncRNA upstream 64989 13467404 ~ 13470135 (+) True G28298
TU41946 lncRNA upstream 95102 13437936 ~ 13440022 (+) True G28295
TU41906 lncRNA upstream 214008 13312934 ~ 13321116 (+) True G28267
TU42167 lncRNA downstream 128686 13757967 ~ 13760112 (+) True G28446
TU42214 lncRNA downstream 198744 13828025 ~ 13828537 (+) True G28486
TU42246 lncRNA downstream 362742 13992023 ~ 13992800 (+) True G28503
TU42247 lncRNA downstream 362782 13992063 ~ 13992800 (+) False G28503
TU42249 lncRNA downstream 362782 13992063 ~ 13992831 (+) False G28503
XM_043236995.1 mRNA upstream 4381 13523950 ~ 13530743 (+) True LOC122342856
XM_043236775.1 mRNA upstream 33600 13497740 ~ 13501524 (+) True tnni1d
XM_043236774.1 mRNA upstream 33600 13497880 ~ 13501524 (+) False tnni1d
XM_043236729.1 mRNA upstream 76229 13446957 ~ 13458895 (+) True scyl2
XM_043236730.1 mRNA upstream 76229 13446957 ~ 13458895 (+) False scyl2
XM_043237998.1 mRNA downstream 36378 13665659 ~ 13669633 (+) True LOC122343497
XM_043237999.1 mRNA downstream 36378 13665659 ~ 13669633 (+) False LOC122343497
XM_043238001.1 mRNA downstream 36378 13665659 ~ 13669633 (+) False LOC122343497
XM_043238002.1 mRNA downstream 40492 13669773 ~ 13673709 (+) True LOC122343498
XM_043237658.1 mRNA downstream 160363 13789644 ~ 13827064 (+) True LOC122343279
TU41881 other upstream 4493 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other upstream 101518 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 219440 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 219440 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 219440 13313868 ~ 13315684 (+) False G28252
XR_006250632.1 other downstream 253613 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 253628 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 356236 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 356236 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 548183 14177464 ~ 14184260 (+) False tbc1d22a

Expression Profile