RNA id: XM_043237875.1


Basic Information

Item Value
RNA id XM_043237875.1
length 3804
RNA type mRNA
GC content 0.44
exon number 11
gene id esr2a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17397135 ~ 17410852 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGGACGGAGCAGAGCACACTTTAACATGCATCCTGACAGCTCATCAAAACACTGGCCATTCTCCCATTACATAGGCTGGAACGGGGATCAAATCaagcaataaaatgttattttgggaTTCTTGCCGACTCAGAAACCAAGCCTTACAGTGGACCATCTGTTGATCAACTAAACATCGATTGCAACAGGTGCTTGTGCTCGGTGCCTGGTATGTTTTGGCCAGTTGCCTGTCTGTGCTAAAACAAGGGTTCAAAAGTCCTCGGCTGACTCACCGTTGGCAGTCCAGAGAGACAGTGTGGCTAACTGCCTCTCTCGCAAAGTACAGTCTACAACACTGTGCTGCATCACGTTTCAGTATCGATGACTGAGGAGTGCAACATGACTCGCATCAATAGCTCCCTGTTGATGATAAGACAGCACTGAACCCGTCCGCCTTCGCTATGTCCGAGTATCCCGAAGGAGACAGTTGTCTACTTCAGCTGCAGGAAGTGGACTCCAACAGGGTGGGAGGTCACGTCCTCTCTCCTGCCTTTAACTCTTCCTCTCCATCTCTGTCGGTGGAGAGCCACCCCATCTGCATCCCATCACCCTACACAGACCTCAGCCATGACTTCTCCACCCTGCCCTTCTACAGTCCTGCTCTGCTGGGGTACGGCGCGTCGCCTCTCTCCGACTGCCCATCTGTGAGGCAGTCGCTAAGCCCCTCCCTCTTTTGGCCACCTCATAGCCATGTTTCTTCGATTGCGTTGCATCAGCAACAGAATCGACTGCAACAAAACCACCCAGCTGGTGGGACCTGGGCAGATCTTACACCACATGATCACAGCGAAGAGGAATACTGCAAACCGCTGGCGAAGAGGGTAGGAGATGCAGAGGAGAGTTCTACTTCTTTGAGAGGTAAAGCTGACATGCACTACTGCGCCGTCTGTAGCGATTACGCCTCCGGGTATCATTATGGCGTGTGGTCGTGTGAAGGATGCAAAGCCTTCTTCAAGAGAAGTATACAAGGACACAATGACTACATCTGCCCCGCCACCAACCAGTGCACCATCGACAAGAACCGCCGCAAAAGCTGCCAGGCCTGCCGTCTGCGAAAATGTTATGAAGTTGGAATGATGAAATGCGGGTTACGGCGAGATCGTGGTAGCTACCAACAAAGAGGAGGACAGCAGAAACGGCTGGCACGATTCTCTAGCAGGATGAGAACATGTGGCCCGAGATCTCAAGAAATCAAAAGTGTCCCACGACCCCTCGGTGGAAATAAGGTGCTTAATATAGCCTTGAGCCCCGAGGAACTAATTGCTCGAATCATGGATGCAGAGCCACCCGAGATTTACCTCATGAAAGACATGAAGAAGCCATTCACTGAGGCCAACGTCATGATGTCGCTGACCAACCTGGCCGACAAAGAGCTTGTTCACATGATCAGCTGGGCCAAGAAGATCCCAGGTTTTGTGGAGCTCAGTCTTTTTGACCAGGTCCATTTGTTGGAGTGCTGCTGGTTGGAGGTGCTGATGCTGGGACTGATGTGGCGGTCCGTTAATCACCCTGGAAAGCTCATTTTCTCCCCAGACCTCAGTCTCAGCAGGGACGAAGGCAGCTGTGTGCAGGGGTTTGTGGAGATCTTTGATATGCTGCTGGCAGCCACATCCAGGTTCAGAGAACTGAAGTTACAGAGAGAGGAGTATGTGTGTCTCAAAGCCATGATCCTGCTCAACTCCAACATGTGCCTGAGTTCGTCTGAGGGAGGAGAGGAGCTGCAGAGCCGGTCGAAGCTGCTGTGTCTGCTGGACTCGGTGACGGATGCTCTGGTGTGGGCCATCTCCAAGACGGGCCTGAGCTTCCAGCAGCGCTCCACCAGACTGGCTCATCTGCTCATGCTGCTCTCCCACATAAGGCACCTCAGTAACAAAGGCATGGACCACCTCCACTGcatgaagatgaagaagatgGTTCCTCTGTATGACCTGCTTCTGGAGATGCTGGATGCTCATATCATGCACAGCTCCCGTCTGTCTCACTCCGGCCCTCGAGTGGCTCCTGCTCCTAAAGAGAGCAAAGTCGCTCAGGAGGCCTTCGCCTGCACTTCTCAGCATGGAGAGACCTTAGGAGCCTCAACCATTTCTGTGCTGAGGAATGATCTATAGTTTTGGGAGAATGGACAACAAAAACAGCCGCGCAGAAAAAGTGGAATACAATTTCTCaagctaaaaaacattttctttttaaaaaatttggcGTTTGCTGTGaaatcctctttttctttttttaacagaacTCATTTTGAACACAGTTGTTTTGTTGTATGTAGCCGTGAACACGCAACACAAAGAAAAGTCCTTCACTTTTTACAAAACCTTATTAATTGCCGGTGGTTTAAAAACTGGTTACCATTTGCTTTTTTGAAATGTAACATGTAACACATATCTGAAATCTGCACCACAATCGAATGTACACTTTCTATTTCTACGCTTATCATTTCCTCCTCTTTCTAAAAAGTACATTTGCAACTCTTGCTTTTTGTGAAGGCCAAAAGAAAATCAGCTGCAGCAACTGCTGTAGATAGAGCGACTATTGAAGACGCTGTCAGAACAAACAGATTCGATTCCTTCACTTTCAAAACGACAATATGAGCAGTCAGTGCTGAAGATGAGAGAGGTTTGTATGCAGTGGGAGCAGAGACCAAAGGCTCAGAAGAACTGAATCaagccttttttttctgtcaggaCTTACATTAGTAGGGCCAAATTCAGGACAGCTGGATGGATGTTATGTTTGCATCTATTACTTTTCACAAAACAGAAGCTTGTTCATCCTGCTCTCTACCCAGTAAACCCTTTAACACCATAACAGCCTTGTACaaagcatttatacattttctaaagacaGCTCAATCGATTGCTACTATTCCACTGTGAAAATCTGTTTGTAAGATGCACCATATGTACCAAAAAAGTACTTGTGATATTGCACTTTAATATTTCTCTGAACTATCTGAAGCCCTATCTTGagaattatatatacagtagtcaacatttgaagtgcaTCAAAACcttaaactaaaacaatacccattcttgtcttaggacaacttttatgctccacttcaaatgttgactacgcTATATAAagagtttgtttgcaaaaacaggtaactccatttttaacatttgtcacgtttttttttttcattgttcattccagttaatctcaaTTAAACTGCCGTTGGCTTATTTTTActgggttaaaaaaaaccttaacattataaaatacatgatttttggaaaaaaaaatgattttcagctttttgcaaataatctctctctctctctgtgagtgtgtgtatacatatacatatactttttgtacacacacacacacatatacatatattgcaGTGCCTACAGTGCTTACAGCCTAgatgacaaaaactaaaaattgtaTACAGGTAAAGAGGAAATGTGTTACAAGATACAGAGTTGTAACAAGTACTTAATTGTAATAAACGCAcagattatttataaatgttattgtatCCGCCGGCAGCCATCTGGATTGTAACGGTTTTGATATATAGCACTAATACTGATTTTGACAAATTTTGGCAACTAAGCATTAAAGACAACTGTAACACAGATATTGTAgacagtgtttatttttgaacagaacaaaagtttcatttgcaaaatgtttttgcaaaatttCCTTTTCTGTACACATCTTTGTGTTCTGCCTTGCAGTGCTTATGTAACACTGTGTTATTTACAAAGGggtgtattaaaatgtttccatgtgcatttga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43253 lncRNA upstream 11455 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 102495 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 176519 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 177621 17219142 ~ 17219514 (+) True G29178
XR_006250626.1 lncRNA upstream 278029 17093963 ~ 17119106 (+) False LOC122342667
TU43359 lncRNA downstream 142981 17553833 ~ 17554190 (+) True G29272
XR_006250563.1 lncRNA downstream 256298 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 299203 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 327215 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 334676 17745528 ~ 17746317 (+) True G29306
XM_043237097.1 mRNA upstream 48265 17308293 ~ 17348870 (+) False jag2b
XM_043237095.1 mRNA upstream 48265 17308294 ~ 17348870 (+) True jag2b
XM_043237096.1 mRNA upstream 48265 17308294 ~ 17348870 (+) False jag2b
XM_043237833.1 mRNA upstream 103499 17266457 ~ 17293636 (+) True nudt14
XM_043236670.1 mRNA upstream 220638 17122433 ~ 17176497 (+) True brf1b
XM_043236627.1 mRNA downstream 72581 17483433 ~ 17490295 (+) True LOC122342653
XM_043236626.1 mRNA downstream 72581 17483433 ~ 17490295 (+) False LOC122342653
XM_043236628.1 mRNA downstream 74046 17484898 ~ 17490295 (+) False LOC122342653
XM_043237592.1 mRNA downstream 154601 17565453 ~ 17578804 (+) True nmu
XM_043237591.1 mRNA downstream 154601 17565453 ~ 17578804 (+) False nmu
TU42966 other upstream 922754 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1411409 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1555280 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1741954 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1841453 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 889563 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1025608 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1472327 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1879368 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2320410 19731262 ~ 19786128 (+) False G29835

Expression Profile