RNA id: XM_043237880.1


Basic Information

Item Value
RNA id XM_043237880.1
length 5572
RNA type mRNA
GC content 0.46
exon number 16
gene id foxp2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2505946 ~ 2602501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaatgggtgCACTGCCGATTTAAGTATGCATGAGCGACGCGTGAGGGACGGGGCCAAAGAGGCGCTTGTTTATGATGCGAGTCTGTATAAACACAGTTGGAGTGATGACACTGATAATCGCACGCTCTTCCCCGTGACGCCCGACTCTCCGCGAAACACCCTCTCCAGCCTGCCGTCCCACACCGCTCACCTGCAGGCCCTACAAGCAGCAAGGCAATTACTCCTACAGCAACCAGGCAGTGGCCTGAAATCTCCAAAGAACAACGACAAACAGCGTCCGTTGCAGGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAGGTCCTTTCCCCCCAACAGCTCCAAGCCCtcctacaacaacaacaagcagTCATGCTTCAGCAGCAACACCTGCAAGAGTTTTATAAGAAACAACAGGAACAACTCCATCTACAGCTTTTGCAGCAACAGCACCCAGGAAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCAGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGcaactgcagcagcagcagcacctGCTCAACATGCAGAGGCAGGGCCTCCTCTCTGTGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCCGCCGAACTCCAGCAACTTTGGAAAGACGTCACTAGTAGCCACGCCATGGAGGATAATGGGCTAAAACACAGCGGCCTGGACCTGAGCACCACCAACAACTCGTCCACTACCTCCACCAGCAACCCCAAAGCTTCGCCGCCCATCACCCATCACGGCATCTCCAACGGCCAGTCCCCGGCCCTCAACAACCGGAGAGAGAGTTCGCTGCATGAAGAGACCGGAGCATCACACTCCCTCTATGGTCATGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGTGATGACTTTGGGCAGTTTTTGAAGCACCTTAACAATGAACACGCTCTGGACGACAGGAGTACTGCCCAGTGCCGAGTACAGATGCAAGTGGTACAACAGCTGGAGATACAGCTTTCTAAAGAACGTGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGCTGAATCTCGTCTCCAGCGTCACCATGTCAAAGAACCTCCCGTCTGTCTCACCCCCCAACTTACCTCAGACGCCCACCACGCCCACCGCTCCAGTCACGCCCCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGCCCCGCCAACGTCCCCAGCATGGGCGCCATGCGCAGACGCCACACCGACAAATACTCCATGCCCTTGTCTTCAGAGATCGCCCCAAACTACGAATTTTACAAGAACGCAGACGTCAGGCCGCCGTTTACTTATGCAACCCTCATCAGGCAGGCTATCATGGAGTCAAGTGACATGCAGCTAACGCTCAACGAGATCTACAGCTGGTTCACACGCACCTTCGCCTACTTCAGACGCAACGCCGCCACCTGGAAGAACGCGGTGCGACACAACCTCAGCCTGCACAAGTGTTTCGTCCGGGTGGAGAACGTGAAGGGCGCCGTGTGGACTGTGGATGAAATGGAATATCAGAAACGCAGgaGCCCAACGCTGGTCAAGAACTTGCCATCCAGTCTGGGTTATGGGGCAGCTCTCAACGCCAGCTTAcagGCTGCGTTGGCGGAGACCTCTTTGCCGTTGCTGGGTAATCCAGGCTTGATGAATAGCGCGTCAGGTATGATGGGGGCTAGTCCTCCAGGACTGATGAGCGGCAGCCCGACCGGCCTATTACAGGGCACCACGCATGAAGACCTCAATGGCACACTAGATCACCTGGACACTAACGGACACAGCAGTCCCGGATACTCCCCACAGACCCAACTGCCTCCAATTCACGTCAAGGAGGAGCCACTAAACATGGATGACGAGGACTGTCCAATGTCATTGGTGAccacagccaatcacagccctGAGCTGGATGATGACCGGGAGCTTGAGGAGGGCAACCTATCGGAGGATCTGGAATGACTATTTTGCCCCACCCCTCCGCTGGGGCTCTGCCCCTTTCAGGCCCCGCCCCTCAACTAATCCACAACCACCGCGAACGCAAAAAGACTGGACGCAGCAGGCGGGAgtatttatttagcatgcatCTGGAGACTGGCCCGAAGAAAATCTATAGCGCAGATCTTTAGGGACCACAGATGGACAGACACGAGACGtctgctgtttaaaaacaaacataaaaggaaGAACAAAAGGACAAGATTTCATTCGAATCAGCTCGGCCACCTCACACAACGAACACGAGGCTCATGGACCGAAAAAAGACAGAAGTGAAACGGGAGCGAGTCCGTTTTGTAGAAAGCCAACGGCCACAtatactgccaaaaaaaaaaaaaaagaagttttaaGTTTGTGAATATCCAAGCCACAGTAGTCGTCGGTGTTAGATGCAATTGCTGGTTCAATTCAAGTTGTTGCTCTGTTATTTTTTGCACATGAGTAGTATCAAAAATTAGTGTCACTGCCTGTATGTcgacaaaattttaaaaaggaaaaaaagctgtttttcgttgttgttgttaatttgtTTTCGCCCCCCTCCCCCCGCCCTCCATCATTTCGTTCTTCCCCGCGACGTAGCTTACGTTCATTTCGAGTCATGTTTGCGGCACCACCAACTGTAAATGGCATTTCTTAAAATCACATCGGTAACACAACCAAGGTATCAAGACTGTTGCagccatccaaaaaaaaaacaaaaaaaacaaacaaaaaaaaaatcgtacacAAAGTAGGTCTCGGGTCTCACTAGCTCCGTTTCTGCTGAAAACGTGAAATGTGATTCAGTCGCAACTGCTACGAGCACCACGCtgagaggaaaaacacaaaagaaaaagatgcgTTTCTGCATATTCTTCTAGTCTCTTTACCTCCTTGTTCTAAAGCTTTGTCTACCTGCAAAGAGTCACAGGCAACAGCTAGAAACCAAAGCCAACACTATCAACGGCCAATAGCTTAGACAGAAGCCGCTAGCCTCTTTGGTCAGTGACTTTAACTAGTACAaagagaagtttttttttttccactaacTACCTTCGAATAACCTCTGGGATTGTCTCCTTTAGCCCTGTACAAAGAGAAAACGATTTTGATGTAATTTGATCGACAGACGGAGCGCTCGCTCTGGCCTCGTCATAAAACGGGAAGACCTCGATTCAGCGACCGTCACGCGGTCCGGGTAGAGCGAGAGAGCAGCTATAAATGGATCACGACCAAATCAACCATTTGTGGAAGTGCAGAAAACGTTACTTTTTgtattccttcttttttttttattattattaatgttatcgTTATGATTTGCGTAAGCCATCTCGTCATGGTTTTTACTAGTGAAATGTACTGTTCATTGTGACTGTCCAACGTTGTCATGTCTTATATCCGTCAGTTTCTTCAGAGCCGAAACCGAAAATATAGTAACCAAACTTTAAGATATCTAGTGAAGCCAAAAAAGTCATGATTTCAAGTCGATATGAAATGATGTGGCTTGGTTATATCGTAAAAAGCAAACAACGGAGCCATGACCGGAAGAGGACGAATCCTTTTCCAGCTGACGTTTGCTTTGCTCCATTGATTCAGACTCATTGTATAATTCATGGCTATATAGACACAGCTCGTGTTGGATCATGGGAAGGTTCGCGGTTAGACCATGTATGGTGTATAAGTAGCAACCGGTTATTTGAGGTGAAACGCTTTGATTTGAACGTTGCTGATGTCATCGAGGAAAAGCGGTTGTTGCTTTAaagtttgcttctgttttcaGTCAAACCAAAGTTATACAGACTTCTGCCTCTTCTTATACAGCGGATGGAGATGAAAATAACGCAAAGCCTGtttccttttcttctctctctctctctctctctctctctctttgattGTTCTCTAATGCAGAAAACCCATTTGAAACGGATAACTGCTTTGTGTTGTAACCGATAATGTCAAAgtttgtctctctgtgtgtgtgaaacataCTGTGCAGTTGTTCCCGTTTCGTGCCAAACCCAAGGGTTGGCTGCTAGTTTtagcacaccaacacacacacacacacacacacacactctaataAGACAGCGAAGCTGGATCCAGGAACAAAGCGTATCCCTTATCCTTTGCTGGAGTCAGCAAATTGACTTGAAGATgacattcataataattttatgGCACCAAATATAAGGACGCAGCGTCTTTGAATAAGAAGATACAAAAAGGGTTCTCCCACTTATCCAAAAAAGGCTTCTACCTCTTCACAACGCGAAAAAAATGGCAGATTGCACGAATCGTTAGAACGCCACCACACATTTTCCGCCCGATTCACGCAGGACGTCGCCAAAAGCGCCAGTTTACATTCCCAAAGGCAGATGTGGAAGGTTTGCATTGAACTAGTTTGTCCTCAGAACATTTGTAGaatgaatatgtaaaaatacCTGTAAGGGGATattgtgttattaaaaaaatgcatgtctaAATTCATTTGGTGGACTGGAAATAAGAATTAATAAACACGTATAATAAAACATCAGGAtgatgttgatgatgatgatgttgatggACTTAAGTGCATAAAGTGTGCATACCTCAGCTATACTGTTTCGGGggggatgatgatgatgatgatgaagatgatcaACAAAAGAAACTCTCAGCCACAGAATGCATATTACCTGTAGAGTTTGCATgggttttgtaaaaacattttaaaaaaatgtctaaaatagtTGCTTGCACATAATACCAGAAGAACCTCCTGATCGGCAATCTCCTCCAATAGATTTTAGGATTGTCTGGGTTTTTTTCTGGGATGattttgtctgtattttgaTAATTgtgcatattatgtaaaaagatacaaaaaaatgttggtgGACCCATGAATTTaccagacattttttttctaagctAAAaagatcagtgttttttttcctcctgaaTTTCATGAATTTTTACTGTTCTCTCATTGCTTGCTAAGAATAGCAAACCTGCTTTTCCTGCATCTGCGTTGCGTAGCTGTAAGGCTTTTcctaatgtgtgtatttattgctTGTACCTCTGTGCATACGTTCTGAAGCATTACGTCTGGCAGTTGAGTCATGTATCCTTTCTAATAACTATCATTCTCCGGGAATATGATCCCCTATGTATACAGTAAATTGGGACtgtagcaaaaaaacaaaaaaaaaaaaaaaaaaacatgtttatgtaaTTGGTGAATaccttttggttgtttttgacttttcgtTTGGTTTCGTTTCCTTCGATTCGAGACTGCTTTTTGATACTTTTCATTACCGTGTACTGTGTCCATATGTTACGGATTTCTGCGAGAGTAGAGGTCACGATTGAGAACTGTAACGGCCgtcattattttctgtattcatGGCTTTTcactgctgaataaaataaaggacCAAAACTAGGATTTGAAAAGCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37667 lncRNA upstream 21628 2439459 ~ 2516391 (+) False G25346
TU37666 lncRNA upstream 67429 2439459 ~ 2470590 (+) True G25346
XR_006250753.1 lncRNA upstream 83730 2439495 ~ 2454289 (+) True LOC122343307
TU37644 lncRNA upstream 125435 2412063 ~ 2412584 (+) True G25334
TU37642 lncRNA upstream 127374 2408969 ~ 2410645 (+) True G25332
XR_006250604.1 lncRNA downstream 59613 2662114 ~ 2663045 (+) True LOC122342588
XR_006250564.1 lncRNA downstream 63841 2666342 ~ 2679743 (+) True LOC122342427
XR_006250552.1 lncRNA downstream 83923 2686424 ~ 2719361 (+) True LOC122342395
XR_006250553.1 lncRNA downstream 83923 2686424 ~ 2719361 (+) False LOC122342395
XR_006250772.1 lncRNA downstream 124301 2726802 ~ 2787657 (+) True LOC122343412
XM_043237518.1 mRNA upstream 143578 2388979 ~ 2394441 (+) True ifrd1
XM_043237924.1 mRNA upstream 348271 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA upstream 348271 2178533 ~ 2189748 (+) True LOC122343453
XM_043237015.1 mRNA upstream 515709 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 542483 1994240 ~ 1995536 (+) True lyrm5a
XM_043237770.1 mRNA downstream 20038 2622539 ~ 2641837 (+) True mdfic
XM_043236336.1 mRNA downstream 244773 2847274 ~ 2862389 (+) True elk3
XM_043237665.1 mRNA downstream 304958 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236380.1 mRNA downstream 309677 2912178 ~ 2913479 (+) True LOC122342536
XM_043237682.1 mRNA downstream 313660 2916161 ~ 2920243 (+) True phyh
TU37230 other upstream 749923 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 865060 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1246795 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1872489 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2163937 373527 ~ 374082 (+) True G24632
TU37871 other downstream 513007 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 517028 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 836630 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 838411 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 844557 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile