RNA id: XM_043237881.1


Basic Information

Item Value
RNA id XM_043237881.1
length 4033
RNA type mRNA
GC content 0.44
exon number 9
gene id pus7l
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7085314 ~ 7091042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTAAGAGCGGAAGCACGTGCTGCGGAAGAAGAGAAGTGACAACAAAAACACGCGGgGTTTCAGAATGGAGAGGGACACTCTCTCCCGCTTCATGTCAGACCATGAAGGTTTCCATGGCACTATAAAAAACTCACCCCAAGACTTTGTGGTTATTGAGAGAGACATCAATGGACAACTTGTTAACGGTCCTTGTGTTCCAGAAGAACACACGAAGAGACCACCTCAACCAAGTCAGGCTGCTAAAAGGGacgatgcattaaaacaatctGAACCAGATGACACTGACGTTTTGACTGAGGATTGCTTTGATCTGAATGTAATCCTGCGTCCAGCTGTGAACAAAGAGCTGGAGCGTTTCACTAACAAAATAAGGGTAAGAGCTGGCGAGAAAGAAAAGGTGGAACTGTCGCTGGGTACTTATCCCGATAAACACCAGAGAGCAGTTGTGCACAGAGCGGTACGATACAACTTCCCCTTTCTCCAGACTCTGACCGACCGGTCGGAGATTCGGGTCAGAGAGGACCCGGACTTCAATGAGCTTGCTAGTTTAGCCTCCGAAGCAGAAGCTGAGGAGTTCTTCCGGTTCATCGATGCCAAAGCGCCTGGTTCTGCGTTCACCTTCCTGCCCGATGACAGCAAGGAGCATCGGACTTCGGTTCACCATTTCGTCAGCAGGCGGTTTGGGAAGCTTGTGGAAACCAAGAGCTTCACCGACCAGCAGAGGACTTCCATTACAGTGAGACTAAGGGAGAGAAGCAGACAACCCAAGAAGAGAGCGATAGCAGAATGTCAAGAGGAGGCGACGTTATACACGGCTTTCACACTGAGGAAGGAGAACCTGGAGACTCTGGAGGCCATCAGCTACATGGCTGCTGTGCTTGGAGTGCTTCCGTCCGATTTCACCTATGCAGGAATTAAAGACAAGCGAGCCATCACCTACCAGGCCATGGTGGTGAAGAAGATCTCTCCAGAGCGGTTGCAGGACCAAGTCTTAGATTTTAAGAGGAGGGGAATGCAGATCTCTCATGTGCGTCCTGTTTCTGAGCCCCTTAAGCTCGGCAGACTCCAGGGAAATCACTTTGATCTTGTCATCAGAGACCTGAAGCCTCATGGGAAAAGTCAACTTACAGAGCTGCAACATCTTGTAAAAGAGGCAGTGGAAAATGTGAAGaacAGAGGCTTTGTAAATTATTATGGTCCCCAACGGTTTGGAAGCGGATCATGTGTCCAAGCAGACCAAGTAGGGCTTGCGCTATTAAAGGAGAAAATGGAGGCTTCCGTTAAGCTGTTCTTCACTCCAGAGGATGGTGATGATCTCCAGAACAAGGCAAAACGTCACTTTCTTCTCACTGTTCCTGTGCATCCGAGAACGACTAACAGCCTCCGTGCATCTCTCTCTTCAGGGAATGCCAAGGAGAGCCTGGCCCTCATGCCAGCTTATAAAGCCAGAGAGCGCCTCATGCTCCGAGCTCTTCACCGATACGGCAGCGGTCAGGAGGGTTGCATACGTGGCTGGCTCAGTTTACCCCACAGCATGAGGGTCTTCTACCTCCACTCCTACTGTAGCAGGGTGTGGAACGAAGCTGCCAAATACCGGCTCCAGACACTGGGCTTTAAGCCTGTCCAGGGAGATCTAGTTTTATGGTCCGGATCTGAAAAGAGACTCAAAGACACCACAGAGGAACTGAACACGCCACAGGTTAGGAACTCGGAGGAACAGGTCCATGTTGTGACCTCTGTGGAAGAAAAGGATGAAGTTTTTTCATTAGACCAGGTAATTCTTCCGATGCCAGGAAATAGCGTCAAGTACCCAGAAAACGTACTGGGCCAGTGGTATCAAGAGCGTTTGGCTGAGGATGGCTTGGGGTCATCTCGTTTCAGAGTGACTTCCCTTAAACTCAACATCCCGGGATGTTATCGCCCGCTGCTCGCAAAGCCACAGAACATGACGTACAGCCTGCAGACCTCTGAGGAGCTTCAGGGACAGTCAGATCAGACCCGTGTGTCCAGTCTATCGGTAAACTTTAACCTGGATGCATCCTGCTATGCTACTGTGTGTCTTGGGGAGATTATGAAGTGTAATCTGTCATAGTTTATTTGATGTGATTAAAAATGCTTACAGACTAAAAATATTGTGGATCTTTTGTAATTGATTTGTGTGAAATATTAGGGGCTGTTTTGTGGCATGTTATATAAGCGATTACCGGGAATTCCTGTCATAAAGCATTTGTGCCAAAAGAAGAAGATATTCTGTGCCACTGTCGATGACGAGGAACTCTGGATGGGCCTTGAAGTTGTACATGcaaagatttaataaaaaataatcttgaCAAatctgattgtttgtttttgaatgtttcagtaagtgaatatttcagtttaatgcatttgaacGTGATTTCAGTATCTATAAAATCTCATGGCAAACATGCTGTTTCTCTGCGTTCCTGATAAGTTCTTTAGCTTTAGTTCTGAAGGAGGTGATCAAGCTGAGTATTTGGATAAGAGCTGACACGCTCATCTAGAAGTGATATTGTAGATCTATGCACTAGATTTCTGTacatgagggaaaaaaagatagGAAAAAAGAGGCTTGCGAATTCTTGCTAACATTATTAGGCCATTAACATTACCACAAATTAGCTCCCCATTTTCTTTGGCTCAGGATATTAAACAcgatttcgatttttttttgtcaccatGTCTAGCAAGACACTGAAACAACAAAACCCCCAAAAGCAAATAAAGGTGACTAAGTATAGCTAATTGACTTTCATTCGTTAAAGTCCTTGTTCAAATTCaatataatgtgttttacagCAAGTGCTTTGGGATTGTGAAAATCCGTTACTGCTTATATGTTAAAGCtcatatattgcaaaataaatgctacTCATTTATCAATCACAGTAGCTTAGGTGATATTATGTATAATCTTCACAAGGTCAACGCCCAATCttgctttttaattaactaattgACTCATTTTTAAACATCCTAATTGAACTATAGACTAATCCTGGTTTAGTCTAAACCCTGTCTTTGAAACCAGGccaaaattaactaaaatagtCAATAACCCTGAAAAGCTAAAACTTACATCACAAACTGCCTCACTGCCTGTCTATGGTATGCAAAATCTTATGCAAAATGCTGTTACCTCTGTGGTTCAGGTTATAGAGCATTGCGTTTTAGTCTTGGAGTCCCGAATTCAAATCCCACTCTCATTTTTTCAACTACACTAACTAAACTGCTTTAAACTAAATCTCAAGCTTACGTTACAAATAACACCAATCATCAGAGTTTAGAACAGTAAGCAAGAATTCTGACAATAAAAAGCGTGTACGTCTACAGACCCTGACGTGGCGCTAAGCACTTTTTCATGTCAAAGACGCCAGCATGGattaaatgtacacacactctAAGATCAAATCTGTGTACGCACTCTATTTAACCAGACTCTGGTGGTATATCATTGCATGGTTATGTAACATTCCATTAAACAAAAGCTTCTAAATAACCTAAACCCTTTATTTagccacatttaaatatatgcaattaaaGATGAGGTTGTGAGACATTAGTTTGATGAGCTCTTTTTGCAAAACACTCAATAAACTCAGCCAGAATGTccttaaatacaaaattacaaattttgGTCACAGACTCAATGGCTCAGGTGGTAGAGCGTTTACCTTCCCTCTTGGAGACATGGGTTCAAACCCCAcgaatgtttattttaaatagttgaaAACTCAATACAACTCTACCTAAAACATCACCATCTCACACTACCGGCTCAGTGGGTCAGAGGCTCAACACATGTAAGTTGCAGACCAGGTTACGGTACAGgtgtgggttcaaatcccacatTGGTGTGTGGGGAACACACCATAGGTGGAGAAAAAACCTGCCCTGAGGTGGAGagaagaccagaccagaccagaccaaaCCAGTGGAGGAGAGAAGAAAAGACCAGACCAGAGGAAGAAGACCAGACCAAACCAGTGGAGGAGAGAAGAAAAGACCAG

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K06176 truD, PUS7; tRNA pseudouridine13 synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39740 lncRNA downstream 128940 6883901 ~ 6956375 (-) True G26799
TU39728 lncRNA downstream 176820 6845559 ~ 6908495 (-) True G26790
TU39736 lncRNA downstream 221933 6862723 ~ 6863382 (-) True G26796
TU39733 lncRNA downstream 223068 6860074 ~ 6862247 (-) True G26795
TU39723 lncRNA downstream 241466 6841974 ~ 6843849 (-) True G26787
XR_006250751.1 lncRNA upstream 75764 7166806 ~ 7189549 (-) True LOC122343305
TU39779 lncRNA upstream 123292 7214334 ~ 7220911 (-) True si:dkey-261e22.4
TU39780 lncRNA upstream 228460 7319502 ~ 7319725 (-) True G26832
TU39813 lncRNA upstream 282131 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 308624 7399666 ~ 7456641 (-) True LOC122343472
XM_043236510.1 mRNA downstream 92417 6970547 ~ 6992898 (-) True prickle1b
XM_043236509.1 mRNA downstream 105236 6970547 ~ 6980079 (-) False prickle1b
XM_043236513.1 mRNA downstream 130675 6951892 ~ 6954640 (-) True zcrb1
XM_043236566.1 mRNA downstream 134418 6940446 ~ 6950897 (-) True yaf2
XM_043236563.1 mRNA downstream 145019 6934093 ~ 6940296 (-) True gxylt1b
XM_043237905.1 mRNA upstream 526 7091568 ~ 7099253 (-) True twf1b
XM_043237904.1 mRNA upstream 28828 7119870 ~ 7157914 (-) True nell2b
XM_043236379.1 mRNA upstream 123412 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236378.1 mRNA upstream 123412 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236618.1 mRNA upstream 134467 7225509 ~ 7318055 (-) False LOC122342649
TU39663 other downstream 345720 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 723872 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1145316 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1171777 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1231949 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 464073 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1156869 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1369464 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1803142 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1804750 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile