RNA id: XM_043237888.1


Basic Information

Item Value
RNA id XM_043237888.1
length 5622
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC122343426
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27832840 ~ 27904868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCAGAGGTGTCCTCGGATATTCCTTCCTCTTTTTCCCCGGAATCTGTCAGCATTCCCGACGGGACGCAGCCAGCTTGTATCCGTGCCAATCCTTTGATATTAGCTCCCGGTGTCGTCTGCTTCATTCTGTGGCGGTGCAGGCAGCCAGACGACCTTTCTCCATGAGGAGCAGTGGAAGATGCCGGCTCTGCCAGCGCTGCTGCTGTCGATtcacctcctcttcctcctcctgctGTTGCTTCTGCTGACCATGGCCCCGTCCTCTCACAGCCAGGCACCTGCTCTCGCAGCCGTCAGGATGGCTGCTATTTTAGATGATCAGTCAGCGTGCGGACGCGGAGAGCGGTTGGCATTGGCTCTGGCCCGAGAGAACATCAACAGTGTGATGGAGGGCCCGGCTCGAGCCCGTGTGGAGGTCGACATCTTTGAGCTGCAGAGAGACTCTCAGTACGAGACTACAGACACGATGTGTCAGATCCTGCCAAAGGGAGTAGTCTCTGTCATTGGTCCAGCCTCTAGTCCTGCTTCCGGATCCACCGTCAGTCATATATGTGGGGAAAAAGAGATCCCTCACATCAAGATTGGTCCGGAGGAGACTCCGCGCTTGCCATATCTGCGCTTTGCCTCAGTGACGCTGTATCCTAGCAACGAGGACTTAAGCTTGGCCATCGGTGCCATCCTGCGCTCGTTCAGTTACCCGACGGCCAGCTTGATTTGTGCCAAAGCAGAGTGCCTGCTGCGATTGGAGGAGCTTGTGCGTCACTTCCTCATATCCCGGGAAACACTCTCAGTCAGAATGCTTGATGAAAATTTGGACCCCACCCCCCTGCTGAAAGAAATTCGCGATGACAAAGTCGCAACAATCATCATCGATGCCAATGCATCGGTGTCAATACTAATACTaaagaaggCCTCAGAATTAGGCATGACGTCAGCCTTCTACAAGTACATCCTCACCACAATGGATTTTCCTCTGTTGAGGTTGGATGATGTGGTAGATGATCAGTCAAATATCGTTGGCTTCTCCATGCTGAACAGCAGTCATCCTTTCTACCTAGAGTTCATCAGGAGTCTGAACCTGTCATGGAGGGAAGGTTGTGATCTCAGCCCCTATCCTGGTCCAGCGTTGTCATCGGCGCTGATGTTCGATGCAGTGCATGTGGTGGTCGGAGCGGTGCGAGAACTGAACCGCAGTCAGGAGATCGGAGTGAAGCCTTTGAGTTGCACGTCTTCGCTCATCTGGCAGCACGGCACCAGTCTCATGAACTACCTGCGCATGgtaGAGTATGACGGCCTAACAGGCCGTGTGGAGTTTAACAGCAAAGGCCAGAGGACCAATTACACGCTGCGTATTCTTGAGAAATTCAAGGGGGGTCACAAAGAGATCGGCGTCTGGTACTCCAATAACACACTGGCTATGAACTCCACATCTTTAGACATCAACACGTCTGAAACCTTAGCCAACAAGACGCTCACCGTCACCACAATACTGGAAAATCCATACGTGATGCGCAAGGCAAACTACCAGGACTTCCAGGGTAATGATCAGTACGAGGGATTCTGTGTGGATATGCTGCGGGAGCTGGCAGACATACTGAAGTTTTCCTTCCGGATCAAGCTGGTGGATGACGGACTGTATGGAGCTCCAGAACCTAATGGGTCATGGACTGGCATGGTGGGGGAACTCATCAACAGGAAAGCAGATCTGGCAGTGGCTGGATTTACTATCACATCCGAGAGGGAGAAGGTCATCGATTTCTCCAAACCTTTCATGAACCTTGGCATCAGTATCCTGTACCGCGTTCACATAGGCAGGAAGCCAGGTTATTTCTCCTTCTTGGATCCCTTTTCGCCAGCTGTCTGGCTATTTATGCTTTTAGCCTATCTGGCCGTTAGCTGTGTGCTCTTCCTGGCTGCCAGGCTGAGTCCGTACGAGTGGTACAACCCTTTCCCGTGTTGGCGGGACCGCAGGGACCTGCTGGAGAATCAGTACACGCTAGGGAACAGCCTGTGGTTTCCGGTCGGTGGTTTCATGCAGCAGGGCTCAGAGATCATGCCCCGGGCTCTGTCCACACGCTGTGTCAGCGGCGTTTGGTGGGCGTTCACGCTGATCATCATTTCCTCTTACACGGCGAACCTCGCAGCGTTCCTGACGGTCCAGAGGATGGAGGTGCCGATCGAATCTGCTGATGACTTGGCTGATCAGACCAACATTCAGTATGGGACAATTCAAGGAGGAAGTACTATGACCTTCTTCATGAACTCGCGCTACCAGACGTACCAGCGCATGTGGAATTACATGTACTCCAAGCAGCCCAGCGTGTTCGTGAAGAGCACGGAGGAGGGCATAGCCCGGGTTTTAAACTCCAAGTACGCCTTTCTTCTGGAAAGCACTATGAACGAGTACCACCGACGCCTCAACTGCAACCTCACGCAGATCGGAGGCCTGCTGGACACCAAGGGCTACGGCATCGGCATGCCTCTGGGTTCACCGTTCAGAGATGAGATCACATTAGGCATACTGCAGCTACAAGAGAACAACAGATTAGAAATCCTAAAGCGTCGATGGTGGGAGGGTGGAAAGTGTCCTAAAGAAGAAGACCATCGAGCCAAAGGTCTAGGTATGGAGAATATCGGCGGGATATTCGTGGTGCTGATATGTGGACTCATAATAGCTGTTTTTGTAGCCATTATGGAGTTTGTGTGGTCCACGCGCCGCTCGGCAGAGACAGATGAGGTGTCAGTATGTCAGGAAATGATGACTGAATTCAGGAACGTTATCTCCTGTAAAAAGAACTCTCGTTTGCGGCGCCGACGGCCCCTCTCGTCCCAGGGCATCCTTCGGCACCCCGCCCGTGTCCCATTAGGAGCTCCCCGTCAGATGCGGCTCGTGAGGGAGATGCGTCTCAGCAACGGCAAGCTCTACAGCGGGACGGGACCCTTAACCGGTGCCGCTGCAGGACCGGGACCCGGCGGGGGCGCTGCGGAAATGGGCCCCGGCCCTCAGCGACTGCTGGAGGACCCTCTCAGTGCCAGCGTCCCCAGTAGCGCACCCGCTCTGGTCCCCACGGCGGCGCCCCGCGGCTGCACACACGTGCGGGTTTGCCAGGAATGCCGGCGGATCCAGAGCCTTCGCTCCACGTCATCTTGCTCGCGCATCTCGCCTCTGGCCTCCGCTACATCCTCTCTCCCGCGTTTGCCACCACCGCCCTCCGCCTCCAGTACAAACACCGACAGCGAGGGAGGAGGCTCGGGCAGCCCACGCAGGGCCAAACCCACGCCCCCTCCAAGGCCGCTGCCGCCCACTAAAACTCCCTCTACCGATCTCCTCTGCAAGCAGGACTGAGACCGAGAGTGAGGAAACTTTTGTCGGGACGggaatttaatgtaaatgagtGCTGGAGGACAGACGGAAAGACTCTGCCCACGCCTCCAGTCAAAGTGACCTCTGGGATACTGCAAATAAAGGCCATTTTTGGatgcaaaattacattaatgGACACTGAGTGAGAGAAAGATGATTCAGCCAGCCGCTTGCTGTCCAAGTGTCCGGTTTTAACACCACGTCTTGCAGCGGTGCACAGAAAGCCAGTGAGGTTTGGCATGCTGTTGAGACTATGTAATGCATATCCCGTGAAAGTATGCTATGCAACATGTCATAAAGGAAAAAGTGGAGGAAAACTATAAGGACAGCTGTTAGTTTTGCATAGAAGTTCGGATCTACGCTCATGTCAGAGGACGATGGAGTCTTTACCTAAAATGTGTGCACGTCGAACTGAAATGACTTTGGTGCAAActtgggtttatttttttcctttcctttaaaCAAGGAGGGAGGGTTACAGTTCATTTGTATTTCTGAATGTCTCTTGCTTGTTTTCCTTTCTAGCCTTTTCTTTggtttcgttctttctttcttttttttgaatatgatACCCGTTTCCcacttaattattaattgttaatttctCTGAGAACAAAGTATATAGATTTTTGTAAGTTTTGCTGGGAGGTTTTGTGGTCAggatttgtttttcctcttcttcaaCCTCTTAAGATTACTCACCTGGATTTAGTCTCTCATCTTCCGTCTTATAACACCAACCGTTAAAGGTTAAAATCAACATGAACAGCATTAAAAGCCCAGTTTACTTCCATTGTGTGACATATTTCCAGGTTAACCAAGATATTCAAGGAGGAATATGCAGGGTGGGTTTCCATCCATCAGCAGTTGATTGGATCTTGCAAAGTGAGCGTTCCAGATCTGAATATCATTAGACCTTGAGAGCATCAAAGCAAATGCCAGCGGTAACACCGCTTTCCAAACCTATACTTAAATCTATgctttatttgctatttttgccataaactttattgtattattgttaaCCGTCATTGAATTACTGTTAATTATTGGCAAGCTTTTAGAAAGGCTGCATTACTGTACTTAATACAGTACTCTACAGTAATACCAATTTGGCTGTTGGTTAATACTAGTAGCCGCACAATCTCAATGATGTCAAGCGAACAGGAAAGTTATTTCACAAgcaagaaaattacatttttagcagtttttcCCTAACACACACTGGTGAATCGTTCACAGTAAGACCAGGAATGCGCGTAAAGAAAATGAATAGGATCGGCTtcgatttcatgttgactttaacaaGCTGCCCGTCAATATTTGCAATTCGCGAGGACAccaagaaacatttttcatcCCTGGAACAATGACAacaacaagacaagacagaaaaCCCTTTGTGCACCTGAAGGGGCATTTATCTGATTATGTGAGAGGACAATTAATGATGTTTTTCATTACAGAACTAAATGAGCCTCTATCATGAATGGTTTGTTGAAGTGCACTAGAAGTTGCTGTCTGGGTGCTTGTGAGATGCCAATATCCATTTATATCCAAAGTGTAAACATAGCAGCCCTGTTTAGAATCTGCAGCATTATAGCATTCGTATGTTGGTGCTTTATgattgtgtgtgagagtgagtgcgTTTGTGTCAAGGGAGATGGAAATGtgataatcattttttaatcaaagctgatttttttatttcccattAATTTTCAAAGATTTCTATACCAGTGCTTGAAGAATCACACCCACAATTGAAAAGAATAAGGCAAATGATTCagattatattgttattaatattccaATAAAACTGTGGGGTAATGTAGGAGGGCTGTTGCCCTCTTTCGTTAAATATATAGACACATGTTTGGAATAAAATGGTGATTCAAACTGTGACTTAATGGATGTTTCTGTTGATAGCGAGTTAGATAACTAGTTTGTCTTATTTATAATACTTTGTTTGGAAAGTCTTACATGTGTCCTAACCAGGTGTGACGCgatatgtaaattaattttgatataaCAGTTATAAAaccttgtaaataaatgttttgtaaaagcaCTAACCTGTAACCACGACGTGCGATGAATGTCAGGACATTTTTTCCGGTACTTGTTTAATGGCTGCATCTGCGAGAAATGTCTGATATTCAttatactgcttttttttatcgATAGAaacttaattatatatttaaaaacgtattttcGAACGATTTCACGTATCATTCATTACACCAACCGTC

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46561 lncRNA upstream 9135 27823406 ~ 27823705 (+) True G31543
TU46558 lncRNA upstream 34631 27797973 ~ 27798209 (+) True G31540
TU46532 lncRNA upstream 119650 27712246 ~ 27713190 (+) True G31520
XR_006250746.1 lncRNA upstream 215982 27607787 ~ 27616858 (+) False LOC122343300
TU46576 lncRNA downstream 7450 27912317 ~ 27951998 (+) True G31549
TU46577 lncRNA downstream 7450 27912317 ~ 27951998 (+) False G31549
TU46595 lncRNA downstream 20580 27925447 ~ 27979133 (+) True G31557
TU46605 lncRNA downstream 27114 27931981 ~ 27934142 (+) True G31567
TU46571 lncRNA downstream 56080 27960947 ~ 28067790 (+) True G31548
XM_043236382.1 mRNA upstream 12593 27799111 ~ 27820247 (+) True LOC122342539
XM_043237690.1 mRNA upstream 39968 27779450 ~ 27792872 (+) True gsk3aa
XM_043237691.1 mRNA upstream 39968 27779450 ~ 27792872 (+) False gsk3aa
XM_043236328.1 mRNA upstream 54054 27756525 ~ 27778786 (+) False cica
XM_043237769.1 mRNA downstream 4562 27909429 ~ 27923209 (+) True si:ch211-264f5.6
XM_043236358.1 mRNA downstream 29770 27934637 ~ 27938820 (+) True LOC122342524
XM_043238045.1 mRNA downstream 36809 27941676 ~ 27945292 (+) True zgc:174904
XM_043237700.1 mRNA downstream 47282 27952149 ~ 27964230 (+) False si:ch211-264f5.2
XM_043237699.1 mRNA downstream 48583 27953450 ~ 27964224 (+) False si:ch211-264f5.2
TU46402 other upstream 464850 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 464850 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 474693 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 608854 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 691216 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 302091 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 313866 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 380160 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 380160 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 395160 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile