RNA id: XM_043237890.1


Basic Information

Item Value
RNA id XM_043237890.1
length 2240
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC122343427
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9542 ~ 13118 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTGCCTAGTCATGCCAAAGTGACCCGCATTCTCCAAGTGTCGAGAGAAAGCGGGTCAGCACTAAATATATCCTCCAGACCCGTGAAAACAAACTCAGTTTGTGTTTTGCAACGCTACGAGGTGCATGGCATTTCTTTCAATGGTTCGTCAAAAACTCTTTAAAGGATTTACAGAGAAAACTAGACATTCGTGTCAGCGTCACAGTCCTGTTTTCACCTAGATCACGGTTTTGTTCACGCGTGCACCCTCTTGAGCTTTGAAACACAATGGACTACATGGAACAGATGGATGAAGATCAGCTCATTGACTTTGTGATTCAAATGAGTCTCCAAGACGCGTGCGGCCTCTCCGTTTTAAACGAGCCGCTAAGCACTTTAGAAACAGCCAGTGATGAAAACCTCAAGATTTTATCAGCCATCGATCAAGGTGATGTGTTTGCGCTGAGGCATCTGCACAAGTACAGTGACGCctataaagagagagacagcaaaGGCTGGCTTCCGATGCACAGAGCTTCAGTCCAGCCGGACGCCCATGTGTTGGACAGCGTGCTCCTAGCATCCCACGAGCTGAGCATGGAGGAGATGACGACTGACGGAGACACTGCTTTGACTCTGGCTTGCGGAGCAGGACATGTGGAGAACGTGAAGGTTCTTCTTCAGCACGGAGCATCTCCACACAACATGAACAGCAGGAATGAGAATCCACTCCTCCTGGCTGTGAGGGCAAACTCGTATGAAATGGTTCATGCCCTGGTAATGAGAGGAGCCTTCGTGCAGCAGGTGTGTTTGAAGAAGTGGACGGTCATCCACGAGGCTGCTAAAGTGGGTTGTGTGGACATCTTGATGCTGCTGCTGAGACACGGGGGGAAGGTCATGGGCCGGGACGGTCACGGGGTCACGCCGCTGGGCATCGCCGCAGAGTACGGCCATCCTGAAATACTGGCAATCCTTATCCAACATGGGGGCGATGTCACAGCACAAGCAGCGAATGGGGACAGTGTGTTATATGACGCCGCAGGCTGTGGGAACCTGGACTGCATTGGTCTACTCTTACAACACGGCGCCAGTCCTAACGTAGCCAGTCTTTGCTCTCAACTGCCCATTCACCGTGCAGCCTATGAAGGGCACTACCTGGCCCTGAAGACGTTCATACCCATCACCACTAAGAGGGCCATCCGTCTCTCTGGGATGAGTCCGGTTCATTCTGCGGCGGACGGAGGCCAGGCTGACTGCCTGGAACTGCTCATCACGAAAGGCTTTGATGTCAACCCAATCCTGGGCTGCCATATTTCCGAAAACTACGGCGATATGAGGAAGACCCCGCTGTACTTCGCCATCTGCAATGGAGACGTCACCTGCGCCGAGATGCTTCTGAAAGCAGGAGCGAAGCCCGACCTGGACCCGCTGCGCTGCCTCCTGGTGGCCGTCAGGGCTGGGAAGTACGAGCTGGTCCGGCTGCTTCTCGCCTACGGAGCGGACGTCAACTGCGTCTTCTCCGTCGTCAGTGACACCTTGTTTCCTACGGCACTGCAGTACTGCCTCAAAGATGAAATGATGCTGCGCCTGCTCCTTAACAACGGTTACCATGCAGAAAGCTGCTTCGAGTGTTACCACGACAACTGCGTAACGTCATACACGTGGGTAGAGGCTTCTAGTCGGTCGTACCAAATCAAGACCGCAACGAATAAAGTAACCTTTTGTGAGTTTATTAGCGTGTCATGGATGGCACACTTGGCGGGGCGGGTGGTTCTGACACTCTTAGATTACGTGAACAACGTGCGCATCTGCTCTAAACTGCAACGCATTCTGGAGAGACAGGAGGAGTGGCTCGATATCTGTGACGTCCTTAGGAACCCACGCTCTTTGAAGCACCAGGCCAGGTTGGTTATCAGGGGATGTATGACACTGAGAAGACTGAATGACCCAGAGATCATGAGCACCGTTCCTTTCCCCCCAGCACTGAAGAACTTCCTGCTTTACAAAGAATATGATATATATGGTCGAATGGATGAACAGtagatatatgttttttattgcaaCTTATTTATGAGTGAAACTATTTGTAATTTTGagataatttaaatatgttttataaacaagATGTTAAAGATGTGCTGCATAAAGATGcgtttattaacaataatacatGATGCATACTTTTCATATAGTAATGCTCACAAAATAAATCATCACCAAGCCCAGGCCacatttcacccaaaaacaataaaaaaaaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10337 ASB15; ankyrin repeat and SOCS box protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36582 lncRNA downstream 11426 24544 ~ 25896 (+) True G24558
TU36571 lncRNA downstream 62270 75388 ~ 82523 (+) True G24553
TU36573 lncRNA downstream 62270 75388 ~ 82523 (+) False G24553
TU36574 lncRNA downstream 62270 75388 ~ 82523 (+) False G24553
TU36575 lncRNA downstream 62270 75388 ~ 82523 (+) False G24553
XM_043237891.1 mRNA downstream 700 13818 ~ 17904 (+) True LOC122343428
XM_043236240.1 mRNA downstream 73886 87004 ~ 89152 (+) False yeats4
XM_043236239.1 mRNA downstream 73908 87026 ~ 89152 (+) True yeats4
XM_043236241.1 mRNA downstream 73908 87026 ~ 89152 (+) False yeats4
XM_043237828.1 mRNA downstream 77090 90208 ~ 107305 (+) True frs2a
TU36577 other downstream 70570 83688 ~ 84962 (+) True G24555
TU36656 other downstream 280117 293235 ~ 295069 (+) True G24609
TU36680 other downstream 360409 373527 ~ 373824 (+) False G24632
TU36683 other downstream 360409 373527 ~ 374082 (+) True G24632
TU36860 other downstream 640974 654092 ~ 665530 (+) True G24771

Expression Profile