RNA id: XM_043237892.1


Basic Information

Item Value
RNA id XM_043237892.1
length 2357
RNA type mRNA
GC content 0.44
exon number 12
gene id ccnc
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1954054 ~ 1960043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGTAATTCTACGGAGTGTTTTTTGTGTCGCGCTCCTCGTCTGATTAGATCAGAGtaccgttttatttttaatacacttaAAACATCACATTAAGGCATATTTTCTACCTCAATCCCCCCAAGATGGCAGGGAATTTCTGGCAGAGCTCACATTATCTGCAGTGGGTTCTGGACAAACAGGATCTGATGaaggagagacagaaagatCTCAAGTTCCTCACAGAGGAGGAATATTGGAAGCTACAGATATTTTTTGCCAATGTGATTCAAGCCTTGGGGGAACACTTGAAACTCAGGCAGCAGGTCATCGCCACGGCAACTGTCTACTTTAAACGTTTCTATGCCAGATACTCTCTGAAGAGCATAGACCCTGTGCTAATGGCCCCCACGTGTGTGTTTCTAGCCTCTAAAGTAGAGGAATTTGGTGTTGTTTCGAACACGCGCCTTATTTCAGCAGCAACATCTGTGTTGAAAACAAGGTTCTCTTATGCCTTTCCAAAGGAGTTTCCCTTCAGAATGAATCATATCTTGGAGTGCGAGTTCTATTTACTGGAGCTCATGGACTGCTGTCTGATCGTGTACCACCCATACAGACCGTTACTGCAGTATGTGCAGGACATGGGTCAAGAGGACATGCTGCTGCCGCTGGCTTGGAGGATAGTGAACGACACCTACAGGACAGACCTGTGTCTGCTTTATCCACCATTCATGATTGCACTGGCCTGCCTGCACGTGGCCTGTGTGGTGCAGCAGAAAGATGCCAGGCAGTGGTTCGCTGAGCTCTCTGTGGACATGGACAAGATCCTGGAGATCATCAGGGTGATTCTGAAACTCTATGACCAGTGGAAGAACTTTGATGATAGGAAGGAAATGGCCACTGTGCTCAACAAGGTGCCCAAACCCAAACCCCCTCCAAACAGTGAGACTGACCAGAGCTCAAACGGGAGTCAAAACAGCTCGTACAGTCAGTCCTAGAGCGGCCCCAGCTGGAGGACCCGAGGCGGAGTGATTCggagagacaaacacagcacATTCTGGCACACCTGAACGCTGCTTTACACAAGCACATCGTTTTATGACCGTGGGGAAACCGATTTCTGGCACACATCCTCTCTCCTTTCCTCTGGGCGTTTCCAGCAATCAGAGCAGATAGAATGTTGccacttccttcctttcttccttccttccttccttccttccttcctttcttccttccttcctcccACCAATCAGAGCAGCTCGTGTCAGAACTGCTCACCAATAGGATATCTGCCAAGCGTAAGGCTGTAGTCTTGAATGttatggacacacacacaaacgcccCTTCATTGGGTATCTGCTTGATTAAGAGGGGTGCTGTTTTCCCAAATCTTGTTAGTCGATGGTCCTGACGTCCTTGAAAAGTCCCATGAAGCATTCTTTCAGCGGACGCTCTTTGGGAACTAagaaaacttgatttttttttttcctgtctgaGAGCGACGAAGAGAGAGCTTATGTTTGTTTAattgcaaatgtatttgtatgCGTGCCTCTCGTTGACCATATCACAGTTTGTATTCCTCAGGGAAACGGATCAGTCCTCTCTACAAAGTGGCTGTCTGTAAACTGATTGGCCACAGGGCTATGTGACGGCGATCTTTTGAACCCTCGTACTGTGTAATCAAATCCTGAGTGGATATTTGACGTGCGTGTGGATGTGAGTTAGAATGCACAAGTGACACAGATAGTTGAGTTGATGACTCAAACGGTGTTGTAAATATGCTTTCCATATATAGCCCTTGACTTTGTTTTTATCGTTTTTCTCTTATAAATTTACTGATTATGGTATATGTGTACTTGCCATAAcccaaatgctgtttttttgctttcattctGTTTTACGTTGAACTGATGTCTTTGTAATCTGCAGCACATTAAAGCGTCCATAACATTTAATGGAGAACAAGTCAATATCTTGAGAGATTTTggaaataattttgaataatggAGCTCTGCATCCTGGTTATCAAGTCCCTCACTTTCCATCATCAGCATTTTCCACTGACGTCATTAGTTTGAGGAACACGAAATTAATTGTGGAAAGAACTTACAagattttgctgtgttttgaatggcatttttgttttttgcatcgTGTCTCCTTTTTGTTTAGCTGTACTTCAGGAGTGTTGCCTCATCTTTGAGTGAACTTGCATAAATGTGGCCCCTCTCTGTTTTACAGTATGTATTATTTgcctgtaaatatatttgatggtGTGAGAGTTGGAGTGAGAGGACTTGCAGTgtcctttatttgtttgtctatAATGGAGCTCAGAAGCCTTATTGAATAAAGCTgctgttgaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15161 CCNC, SSN8; cyclin-C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37445 lncRNA downstream 50593 1903185 ~ 1903461 (-) True G25190
TU37443 lncRNA downstream 55797 1896886 ~ 1898257 (-) True G25188
TU37439 lncRNA downstream 108654 1845129 ~ 1845400 (-) True G25185
TU37436 lncRNA downstream 122535 1831171 ~ 1831519 (-) True G25182
XR_006250585.1 lncRNA downstream 124466 1825186 ~ 1829588 (-) True LOC122342506
TU37518 lncRNA upstream 31949 1991992 ~ 1993756 (-) True G25240
TU37567 lncRNA upstream 72198 2032241 ~ 2032656 (-) True G25277
TU37586 lncRNA upstream 131309 2091352 ~ 2097801 (-) True tnni4a
TU37588 lncRNA upstream 131309 2091352 ~ 2094893 (-) False tnni4a
XR_006250781.1 lncRNA upstream 146721 2106764 ~ 2118325 (-) True LOC122343450
XM_043236226.1 mRNA downstream 538 1946529 ~ 1953516 (-) True faxca
XM_043237695.1 mRNA downstream 36904 1907494 ~ 1917150 (-) True tmem63a
XM_043236174.1 mRNA downstream 51391 1898403 ~ 1902663 (-) True rsph9
XM_043236621.1 mRNA downstream 91860 1851243 ~ 1862194 (-) True vegfab
XM_043236893.1 mRNA upstream 5809 1965852 ~ 1972410 (-) True pgm3
XM_043236892.1 mRNA upstream 19064 1979107 ~ 1985058 (-) True foxm1
XM_043236223.1 mRNA upstream 35399 1995442 ~ 2000075 (-) True slc5a8
XM_043237025.1 mRNA upstream 62282 2022325 ~ 2024209 (-) True arl1
XM_043237023.1 mRNA upstream 72780 2032823 ~ 2042861 (-) False tnnt2e
TU37444 other downstream 51487 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 299247 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 335756 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 335756 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 883958 1069160 ~ 1070096 (-) True G24875
XR_006250653.1 other upstream 82910 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 342284 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 344303 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 1061019 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1574794 3534837 ~ 3547467 (-) False LOC122342819

Expression Profile