RNA id: XM_043237897.1


Basic Information

Item Value
RNA id XM_043237897.1
length 2164
RNA type mRNA
GC content 0.51
exon number 19
gene id lta4h
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2835848 ~ 2845005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTCACAGCGCGAGCGGAGTGCTCTCTGTCTCAACCATGACTCCCGTGTCAGACCACAGCTCGTTCTCCACTCTCTCCAAGTGCGCGACCAAGCACTTAAACCTCATTTACCATGTTGACTTTGACAGGCACGTGCTCAAAGGGAAGGTGGCCCTGACGGTGGAAGTTCTGGAGGATAAATTCTCTTCTCTGACACTGGACTCAAAGGACTTGAAGATCTTTAAGGTTTCTGCCAATGGCCAGGCTGCGCAGTTTACGCTGGGGACCAAGCATAAATTTAAGGGATCCCCGCTAGAGATCACTCTGCCTTTTGAACTCTCACGcggGCAACATGTGATTGTGGAGATCGAATACGAGACGTCTCCTAGTGCTACAGCCCTGCAGTGGCTGACCCCCAAACAGACTGCTGGGAAAAAACACCCATACCTTTTCAGCCAGTGCCAGGCCACTCACTGTAGGACCATGGTGCCTTGTCAGGACACCCCATCGGTGAAGCACACTTACTATGCCCAGgtgtcTGTCCCCAGAGAGCTGGTGGCATTGATGAGCGCATTGCGTGATGGTCAGGAACCAGATCCGAGCGACAGCAGCCGAGTTATCTATCGCTTCAGACAGCCGGTCCCAATGCCTTCTTACCTCATTGCTATTGTCGTTGGTGCTTTGGAAAGCAGGGAAATCGGCCCCCGATCCAGAGTTTGGTCTGAGAAGGAGTATGTGGACGAGGCAGCGTTTGAGTTTTCAGAGACTGAGACCATGCTGAAGACGGCTGAGAGTCTGGCAGGGCCGTATGTGTGGGGCCAGTATGATGTCCTGGTGCTGCCTCCGTCTTTTCCTTACGGGGGCATGGAGAACCCCTGCCTTACATTTGTCACTCCTACTGTACTGGCTGGAGACCGATCCCTCGCTGGTGTCATTGCTCACGAGATCTCACACAGCTGGACGGGGAACCTGGTGACTAATAGGACCTGGGAGCATTTCTGGTTGAATGAGGGTCACACTGTGTACATCGAGAGAATGATCGCCAGGTCTATGGAGAGCGAACAGCTCCGGCAGTTTAAAGGCATCGGAGGCTGGAAAGAACTTCAAGAGTCTgTTAAACAGTTTGGAGCGAAAAACGTGCTCACAAACCTGGTCCCGAATCTGCATGAGGTGGACACGGATGAAGCCTTCTCCTCTGTGCCCTACGAGAAAGGGTTCGCTCTGCTTTATCATCTGGAGGAACTGATGGGAGGTCCAGAGGTCTTCATGGGTTTCGTGAAGTCTTACATTCAGCTGTTTGCCTATGGCAGTGTAACCACAGAGGAATGGAAGAACTATCTGTTCACTTACTTCAAAGACAAGGTGGACATCTTGAATAAAGTGGACTGGAATGGATGGATGCACACTCCAGGAATGCCTCCCGTCAAACCACAGTATGATACCACTATGGCAGATGCCTGCACTGCTCTGTGCCAGAGATGGGTGAAAGCAAAAGAAGAGGACCTTGCAAGTTTCACCGAGGCAGATGTGAAGAAACTCAACTCTCCTCAGCTCATCGAGTTCGTGGCTTTGTTGCTCCAAGAGGAGCCCCTTCCTCTGTCTCATGTGAAGAAGATGCAGGAGGTCTACCAGCTGAACTGCGTTAAAAATGCAGAAGTCCGCTTCAGGTGGTTGCGCGTCTGCGTGAGGGCACACTGGGAGCAAGCCGTCCCCCTGGCGCTGAAGATGGCCACTGAACAGGGCAGGATGAAATTCACTCGCCCGCTCTTCaaGGAAGTTTACAGCTTCTCCAAGTACAGCGAGGAGGCAGTGAAGACTTTTAAGGAGCACCGTGGAGCGCTGCACCCCGTTACAGCCATGCTGGTGGCCAAAGACCTGAAAATCGATGGCTAAGATGCTGCTTTCTGATCTTCCTATACACGAGCAGCGTTTCTATGCTTCAGCCTAGTGCTCGGATACAAAGCTGCATATCACACCTCCAACAGACGGGTTGCTGTGCAGAACGTTTTTCTCTTCATCGGCCAaagcttgcattttttttaatgtctcagTCTCAGGGCTCAGAacacaaaacaagcattttcaGTATCATGTAGTTCAGTGTTAAGAAATGAGTGTATCGTGACGTGAAGGATTGCTTCATGTACAAAGTAATGGTCTCCAATAAACTCATCTGTACAAGA

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0004463 leukotriene-A4 hydrolase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01254 LTA4H; leukotriene-A4 hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250774.1 lncRNA downstream 297842 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 298390 2535072 ~ 2537458 (-) False LOC122343423
TU37702 lncRNA downstream 362814 2472284 ~ 2473034 (-) False LOC122342907
XR_006250773.1 lncRNA downstream 546729 2279226 ~ 2289119 (-) True LOC122343417
TU37692 lncRNA downstream 552070 2283285 ~ 2283778 (-) True G25362
TU38074 lncRNA upstream 135154 2980159 ~ 2996458 (-) True G25625
TU38062 lncRNA upstream 161765 3006770 ~ 3012214 (-) True ccdc3a
XR_006250573.1 lncRNA upstream 271399 3116404 ~ 3117297 (-) True LOC122342459
XR_006250572.1 lncRNA upstream 272474 3117479 ~ 3119550 (-) True LOC122342458
TU38132 lncRNA upstream 535653 3380658 ~ 3676399 (-) True G25673
XM_043237853.1 mRNA downstream 12701 2783461 ~ 2823147 (-) True tfec
XM_043237855.1 mRNA downstream 38702 2783461 ~ 2797146 (-) False tfec
XM_043237856.1 mRNA downstream 40031 2783461 ~ 2795817 (-) False tfec
XM_043237854.1 mRNA downstream 41480 2783461 ~ 2794368 (-) False tfec
XM_043237100.1 mRNA downstream 331635 2499774 ~ 2504213 (-) True ppp1r3aa
XM_043236335.1 mRNA upstream 18135 2863140 ~ 2904289 (-) True cdk17
XM_043236333.1 mRNA upstream 18135 2863140 ~ 2904143 (-) False cdk17
XM_043236334.1 mRNA upstream 18135 2863140 ~ 2904138 (-) False cdk17
XM_043237074.1 mRNA upstream 82800 2927805 ~ 2934976 (-) False mcm10
XM_043237073.1 mRNA upstream 82800 2927805 ~ 2934976 (-) True mcm10
XR_006250644.1 other downstream 460132 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 460132 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 747269 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 933281 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 1181041 1653591 ~ 1654807 (-) False ccdc167
TU38086 other upstream 176057 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 689832 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 703221 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 755995 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 757353 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile