RNA id: XM_043237899.1


Basic Information

Item Value
RNA id XM_043237899.1
length 3536
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC122343436
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28387507 ~ 28410310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAGATGGAGGAGAAAGAACAGAGTGTTATTTTAAACGGCTGCGCTGAAGCCAGAGAGCGAAAGACGCTGGGGTTTCTGGAGGTCCGAACACGACCGGACGCCCGTCTCCGCGCCGCTCACAAATACGACACTGGAATCTTTCATAAAGCAGAGAGCTCGTCTTACTGAAGTCGTCCCAGAGCGCCTGCTGTTTTGTGGTTCGAGCTGAAATGGATCAGAAAAGCTTCATCGTGTCAGAAACGCGTCTGTGAACACCGGAGCCAATGGATATTAAAGGCCAGTGCTGGACGGATGAAGAATCGGATGGAGAGAATGAACCGGAGCAGTTCCTCTACGGGATCCAGGGGAGCTGTGCGGCTGACCTGTACCGTCACCCACAGCTGGACGCTGACATCGAGGCCGTAAAAGACATTTACACGGACAGCGCTGTGTCCATCAGGGAGTACGGCACCATCGACGACGTGGACATCGACCTGCAGATCAACATCAGCTTCTTGGATGAGGAGGTGGCGACCGCGTGGAAGGTGATCCGAACCGAGCCCATCGTCTTACGCCtgcgtttctctctctcacagtaCCTGGATGGACCGGAGCCGTCTGTGGAGGTGTTTCAGCCGTCCAACAAAGAAGGCTTCAGTTTGGGCCTTCAGCTGAAGAAGATCCTCAGTACGTTCACGTCTCAGCAGTGGAAGCACCTCAGTAATGAGTTCCTCAAAGCCCAGCAGGAGAAGCGACACAGCTGGTTCAAAGCTGGAGGAACCATCAAGAAGTTCCGCGCAGGACTGAGCATCTTCTCCCCGATTCCCAAGTCTCCCAGTTTCCCCCTGATCCAGGACACAGTGTTAAAAGGCAAACTGAACGTGCCCGAGCTCAGAGTCACCCGGCTCATGAACCGCTCCATCTCCTGCACCATGAAGAACCCCAAGGGGGAGCTGTTTAGCTATCCTCCGAACAGCCAGACTGTGGCTGTCCCGGCGGGCAGGGCCCCTGCGCAGATTACCACCCGCCAGCTGATTGAGTTGTTTTTCTCATCCCAGGCGGGCGGACACTGCAAGAACATCCCCACGCTGGAGTACGGCTTCCTCGTGCAGATCATGAAATACTCGGAGCAGCGTATCCCGACTCTGAACGAGTACTGTGTGGTGTGTGACGAGCAGCACGTCTTCCAGAACGGCTCCATGCTGAAGCCCGCGGTTTGCACGAGAGAGCTGTGCGTGTTTTCCTTCTACACGCTGGGAGTGATGTCCGGAGCGGCCGAGGAGGTGGCCACCGGCGCAGAGGTGGTGGACCTGCTGGTGGCCATGTGTCGAGCCGCTCTCGAGTCGCCCCGGAAGAGCATCATCTTTGAACCGTACCCGTCTGTGGTCGACCCCAATGACCCCAAAACACTCGCCTTCAACCCGAAGAAGAAGAATTATGAGCGTCTGCAGAAAGCTCTAGACAGTGTGATGTCTATTCGGGAAATGACACAGgGCTCGTATCTGGAGATTAAGAAGCAGATGGATAAACTGGATCCTTTGGCTCATCCGTTACTGCAGTGGATCATCTCCAGTAACAGGTCTCATATTGTCAAGCTGCCGCTCAGCAGGCAGCTGAAGTTCATGCACACTTCTCATCAGTTTCTGCTGTTGAGCAGCCCGCCGGCGAAAGAAGCACGCTTTCGCACCGCAAAGAAACTCTACGGCAGCACCTTCGCCTTCCATGGCTCCCATATCGAGAACTGGCACTCGGTTCTGAGGAATGGACTGGTCAATGCCTCCTACACTAAACTGCAGCTGCATGGAGCAGCGTACGGGAAGGGCATCTATCTGAGCCCCATATCCAGTATTTCCTTTGGATACTCAGgaaTGGGGAAGGGTCAGCATCGCATGCCCAGCAAAGATGAGCTAGTCCAGCGGTATAACCGCATGAACACGATGCCACAGAGTCGGCCGATTCAGTCACGCTTCCTCCAGAGCAGGAACTTAAACTGCATCGCTCTCTGTGAAGtgATCACGTCCAAAGACCTGCAGAAACACGGAAACATCTGGGTGTGTCCGGTGTCCGACCACGTCTGCACGCGCTTCTTCTTCGTgtacGAGGACGGTCAGGTGGGAGACGCTAACATCAACACACAGGAGCCCAAGATCCAGAAGGAGATCATGCGTGTGATCGGCACACAGATCTACTCCAGCTGAAGCCTCTCGTCCATCAACTCTATCCATCTCTACTTTCTTTAGTCCTGTCTTTCTCAAGGGAGGCGGGGTTTCTGCGCGAGCGAGCGAGCTGAAGGACAACTTCACAGACTTCAACGCAGACAGGCTCCTGATTGGACGAGACGGATCTCGGCGGATCACACTAAATATCTGTACACGTGCAACCAAGAAAGTCATTCAAAATGCGTTTTTTGGCATCTCTGGATAGTAAATAACGAATGTGTGCGTTTTATTGTGTTCTCCTGTATCTCCTTCATCTTTCCGCTCCGCTGGCGTGTATTAATATCTGCTGAAATCGGTTTCCCGTCTTCTGTTGCTCGGCTCCGCTTACACGTCGTTACTCATGGTTCTGCTTCCGGCTTTCTTTCCGTCCTCAGACACATCCCCGAGCGCTCGTGGGCGACCTCCACAGACGGCCAGCAGTCAAACGTTCGGACGCGTTATGGTTTGTGTTTTCACGCCGGCAGTAGAGCGCGCAAACCCTGAGATTCACAGCCGAGACTCTTTTGAAGTTGACGTGCGATTTAAGATGCTGAAGCAGTTCTCCTCGACTGATTCgatgtttgcatttttaaggaaaaacttttaatgcacgctaaaaaaaaaaaaaaaaaaagataggtAAGTGGTTGCGATTAATTTATTTGAGCTACTTTTAGATAAATTTAGTCGACTCACTTCcagctaaatttatttaaatagtttgattGCGCACACTTACcttacttaataataataataataatatcagtattaaaatataatataataatgcattcaaaaaaaaagttaagcaaCCTTCAGATCAAGCCAAAATACATTTCTCAGTAATAAACcgtatttaaattgaaatcaatttatttataataactttttttcatcatttaattgAAAGGTTTATGACTTtttcctgaaaataaaattggaAAAGTTACAAAAGGCACTCGAATTTCAGAACGTGCCGCTTCATGATTTCTATGATTTGTTTTCGTGATATTATGAACATAATTTTCTCGTCATAACCTGCCAATATGGCTGCTGagttatgtgtatgtgctgaGTTAATTGTGTCTGTTTTTGACAGGTTGGCAGGTTTTGCATGGATAAATTATTTGTACGatattccataaaaaaaatcaaacatttttttttttatataaatatatcattgaTTTTTGCTGTTTCCGTGTCCAGACGCCTGActgccggtgtgtgtgtgtaagtggtTTGTTTGAGGAGCTGCCCTGATTCTGGACGTGGATGCGGTCAGCTCTGTTGTTTCTGATGATGAACTGCTTGTACGGGTggagctgaataaataaagagagatTTTGCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250633.1 lncRNA upstream 3132 28380612 ~ 28385954 (+) True LOC122342705
TU46588 lncRNA upstream 13299 28372385 ~ 28375787 (+) False G31551
TU46585 lncRNA upstream 13299 28373484 ~ 28375787 (+) True G31551
TU46586 lncRNA upstream 13299 28373484 ~ 28375787 (+) False G31551
TU46711 lncRNA upstream 118502 28270102 ~ 28270584 (+) True G31631
TU46742 lncRNA downstream 110674 28520984 ~ 28541933 (+) True G31653
TU46741 lncRNA downstream 111438 28521748 ~ 28522333 (+) False G31653
XR_006250587.1 lncRNA downstream 157975 28568285 ~ 28593867 (+) True LOC122342517
TU46760 lncRNA downstream 236667 28646977 ~ 28652833 (+) True G31665
XR_006250740.1 lncRNA downstream 420325 28830635 ~ 28831298 (+) False LOC122343276
XM_043236221.1 mRNA upstream 21608 28360946 ~ 28367478 (+) False dhdh.2
XM_043236222.1 mRNA upstream 21631 28360946 ~ 28367455 (+) True dhdh.2
XM_043237531.1 mRNA upstream 28844 28354430 ~ 28360242 (+) True dhdh.1
XM_043236153.1 mRNA upstream 71504 28297302 ~ 28317582 (+) True LOC122342379
XM_043236151.1 mRNA upstream 188075 28197236 ~ 28201011 (+) True LOC122342376
XM_043237683.1 mRNA downstream 10939 28421249 ~ 28537332 (+) False celf6
XM_043237684.1 mRNA downstream 10939 28421249 ~ 28537332 (+) False celf6
XM_043237685.1 mRNA downstream 10939 28421249 ~ 28537331 (+) True celf6
XM_043236154.1 mRNA downstream 183567 28593877 ~ 28594995 (+) True LOC122342381
XM_043236156.1 mRNA downstream 559941 28970251 ~ 28993117 (+) True LOC122342385
TU46732 other upstream 35860 28350353 ~ 28353226 (+) True G31649
TU46717 other upstream 68392 28285027 ~ 28320694 (+) False G31636
TU46990 other downstream 420330 28830640 ~ 28893627 (+) False LOC122343276
TU46989 other downstream 476843 28887153 ~ 28893627 (+) False LOC122343276
TU46991 other downstream 476843 28887153 ~ 28893627 (+) True LOC122343276

Expression Profile