RNA id: XM_043237923.1


Basic Information

Item Value
RNA id XM_043237923.1
length 3894
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122343453
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2178532 ~ 2189748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACAGCGGCATGTCAATGTGACAACCGAGCGAGCGGCTGCAGATGCGCCTCTGAACGCGGAGGAAGAAGGAGGTTGTCAGTGCGAGGGACTCTAAAAAGCTCCCAGACGGCTCTCACCTGGTGGACTTCGCCTCGTTCGTACGGCAAAATCTCAACGTTAGGAGCGCGAGCCGCCGCTGCTCCCCTGTCTGCGTTGGAAGAAGACCACGCGCGCTTATTTTCATTTGCGTGGCGCGAGCTTTCCGCTCTCTGGAGCACTGCGCTATAGATGAACGGAATACATGTCGCCTTATCGACCGGAATGACTTACGCTGAAACGGTAGAAGTGGATTAGGCTGATGATGGCACCATCAATGAAATGAACGATCTTGCTTCTGCCTAGCTGAAACCACAGCTACCTGAGGTTTAATGGTGACCTTTTTACCTTTATCTGCCCAACTAGTAAAATTCCCTACACCACCTTCAATCTGAATTACGGGAGACTTGGCGACGGGACATTGCATCTGTTGACAGCACATCAGTCAGGGCCTAGGGAAGGCCCTCAAGTGAGGATTCAAGTGATCACCACAAATGGTTGATTATTTTTGAAGTGAAGTGCTTTTGCCACAAAATCTTTAAGGACCAACTACTTACTGGTGGGAACCGTGCCAATATGAAGGACATATCATTTGCGGATTATTTGCTAGTGGGTCTTGCAGTGACTACCTTGGTTCTTGCTGCAGAAGAGAGAGTCAGTTGTCCCAAACTTTGCGTATGTGAGATTAGACCCTGGTTTTCCCCTAGCTCTGTCTATATGGAGGCTCCCACTGTTGACTGTAATGACCTTGGACTTTTTGACCTGCCCATGAGATTGCCATCTGATACACAAGTTGTTTTACTGCAAACCAACAACATTGGTAAGATTGAGCACCCTGGATTGGATTACCTGCCAAACATCACTGAGATTGATCTCTCCCAAAACAACCTGTCATCAATAAGTGATGTCAATATTGGACACCTCCCTCAACTCTTATCCCTACACATGGAGGAAAACTGGATATGTGCCCTACCAGACAACAGCCTTTCTCAATTGGCCAACCTTCAGGAGCTCTATCTAAATCATAACCTCATCTCCTTCATTTCCCCTGAGGCTTTTCGTGGTCTTCAGAGCTTGCTGAGACTTCACCTCAATTCCAACCGGCTTCAAAGTATAAAAAGCGAATGGTTTGAGCCCTTACCGAATTTGGAAATTCTAATGATTGGGGAAAATCCTGTCCTCTCTATTCAGGATATGAACTTCAAGCCTCTGAGAAATCTACGCAGCCTGGTTCTTACTAGAATGAACCTATCACAGATACCAGATGATTCACTTCTGGGCCTTGACAATTTGGAGAGCATCTCATTTTATGATAATACATTCCCTAAGGTACCCCACGGAGCTCTCAGGCATCTGAAGAGCCTCAAGTTTTTGGATCTTAATAAGAACCCCATTGGGCGAATTCAAAGGGGTGACTTTGTGGACATGCTCCATCTTAAGGAGCTGGGCATTAACAGCATGCCCGAGTTGGTGTCCATTGATAGTTTTGCCCTCAACAACCTCCCAGAACTGACAAAAATCGAAGCCACCAACAACCCTAAACTTTCCTACATACATCCAAATGCTTTCTATAGGCTGCCGAGGCTGGAAACTCTAATGCTAAATGGCAATGCTTTAAGTGCCCTCCACAGGATCACAGTGGAGTCCCTCCCAAATCTCCGGGAGGTCAGCATGCACTCTAACCCCATCCGCTGTGACTGCGTTGTACGGTGGATGAATATGAACAAGACAAACATTCGCTTCATGGAGCCCGATTCTCTGTTCTGTGTGGAGCCTCCGGAGTATGAAGGTCAGCATGTGCGGCAGGTTCACTTCAGAGAGATGATGGAGATCTGTCTGCCTCTCATCTCTTCAGAAAGCCTCCCCACACAAATCAGTATGGAAAGTGGGAGATCTGTGTCTCTTCACTGCCGTGCCTTTGCTGAACCTGAGCCAGACATTTACTGGGTGACTCCGTCAGGGAGAAGGGTCATCCCAAATGCTGTTTCTACGAGATTCTACATGCACCCCGAAGGCACACTTGATATTTATGATATCACTGAGAGTGAGGCTGGATTGTACACATGTGTGGCACACAATCTTGTTGGGGCGGACCTGAAATCTGTCTCAGTGGAGGTAAATGGATACTTCCCACAACCTGTCAATGACTCACTGAATGTCAACATCGAGACTGTACAGACCAACTCTGTGTTGATATCCTGGAATGCCTCTCATGGTAGTCTGGCACCAAACATTAAGTGGTATACAATGCCCAAGGCAAACCATCCAACGGTGGCATTCACAGCTAGGGTACCATCTGATGTGGCTGTATATAATCTCACGCATCTCAGCCCTGCTACACAGTACAAAGTGTGTGTGGACATTCATAGTATCCATCATAAACACGACACGAGGTGTGTCAATGTCCTAACTAAAGGATTAGAACAAGCCGTAAAGGACTCAGAGAGGTGGGATATGGCGCTGATTGCTGCTTTTGCTGTGCTTTTCATTGTGATCTCAGTGGCTTGCTTTCTGATTTATGTCTTTATGAGGAACCGCTGCATTTATGGAGAACTGAAGCGATACCCTTCCAAAATGGCTCTGATGTCTGAGACCAGCCAGCAGTCTCCCTTTACAAGGCTCTGGATTTCTGGGAAAGGGATGCCAGCTGCTGTTGAGGTGAAAGCCACAGTCATAAATGTGTTGGACAATGCATTTTAAGCTGCACGTGCAGAGGACCACAAAAACTACAAGCAAATTGAAAAGGCAAGAGCGGAGAACTTGCTGTTCCAACTTGCCATTTATCTTTTTGCCTTGAAACAGACATCAAATTCAAATAGAAGGGATGTCTAAAAATCTATAACTAGCTATATAGCCCCTCATCACGAGCTGTCAGATGTGGCAAGTGGCGATGGAACAGTGGTAACTAGCGAGAGGTAGAGACTTGCTGCTAAAATATGCAGTGTGATATTTCTAGGCCATTCACTGAAAACAGATGATATTAAGACATCAGGAAGGTGTTGTTTCTCATACCTGACTGTTAAATGTGTAAAGAGTAGTGGAACAGTCCTTGTGGTCCCAAGCAATACCGTCTGTGCTGTACGACAACCACATAGGCGTGTTAGAGACCCGACTGTTTGTTGAGAAGGAAATCTAGTAGAATAGAAGATTACGGTGATTATGATGTGAACTTTTgatgaaatgttgtttttctatttaaaagcaGATCTGTCTTTTCATGCctaaaattgttatatattctATCCAGAAATGTAACAGGTATCTTCTGTGCAGTAGCCAGTAAACAAGTGTGAATTACTTACAGTATGAAAGATACAACTTAAGTAACGAGACTACacatttgctgaataaaacacaaatgtacatCTTAAGGAatctatatacataaatatatattatatttgattatattactATCAGGACTGGATGTTGTTGAATGCAGACACTTTAAAAGCATCTCTCAGACATAAAATGCAGAAGGTTGATCATGACAGGGTAAGTGCCTACTCCTGAATCTTAGaccagaaaaaagaaaacaacaacaacacttttGAATGTTACTTCTAATGGTTTCCTGAGAGATCCCTGGAGAACAGAGCCATGATTCCAGCCTCACATGCAAATTTGTGCAAATACTATATGAGTATTTTTAGCATAAACATGGTTTAAAAGCATTGCGTCCTTGCTTTGAGTGtgaaaaagccatttttatattGACTGTGCTGTCTGTTCTACCCTAAGCACATTAGTCAATGAGACCAATGTGCTTAAggtaatgtaaaaattaaataaatgtcagcgtttttttttcttctca

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37601 lncRNA upstream 10536 2167733 ~ 2167997 (+) True G25300
TU37589 lncRNA upstream 71439 2106763 ~ 2107094 (+) True G25288
TU37531 lncRNA upstream 127581 2049224 ~ 2050952 (+) True G25249
XR_006250654.1 lncRNA upstream 145484 2028796 ~ 2033049 (+) True LOC122342875
TU37610 lncRNA downstream 93542 2283290 ~ 2283777 (+) True G25309
TU37613 lncRNA downstream 98432 2288180 ~ 2301771 (+) False G25310
TU37615 lncRNA downstream 109892 2299640 ~ 2302399 (+) True G25310
TU37619 lncRNA downstream 114220 2303968 ~ 2305859 (+) True G25313
TU37637 lncRNA downstream 212697 2402445 ~ 2402674 (+) True G25327
XM_043237015.1 mRNA upstream 156223 2001089 ~ 2022310 (+) True utp20
XM_043236224.1 mRNA upstream 182997 1994240 ~ 1995536 (+) True lyrm5a
XM_043238038.1 mRNA upstream 184945 1990505 ~ 1993588 (+) False usp18
XM_043237518.1 mRNA downstream 199231 2388979 ~ 2394441 (+) True ifrd1
XM_043237879.1 mRNA downstream 316198 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 348271 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA downstream 348271 2538019 ~ 2602501 (+) False foxp2
XM_043237770.1 mRNA downstream 432791 2622539 ~ 2641837 (+) True mdfic
TU37230 other upstream 390437 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 505574 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 887309 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1513003 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1804451 373527 ~ 374082 (+) True G24632
TU37871 other downstream 925760 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 929781 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1249383 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1251164 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1257310 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile