RNA id: XM_043237931.1


Basic Information

Item Value
RNA id XM_043237931.1
length 3797
RNA type mRNA
GC content 0.39
exon number 20
gene id b4galnt3a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13502936 ~ 13513404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGTGTTAACTAATAGAGGTATGCAAAGTACGCTGGCGCCGGAACAAGGACTGGAACTGGGAACCGCCTGCCTAAACCattcagctttttattttaaattacattttacatttatacgtTTTTCACAgtatctttctttatttttaacaagctATAAGATCGACTTTAGGGAGATTTTGAGAGATTTTGAACTCCAGCCAACAGAACATTTAACTAACCCTTGTCACACAAACATCTTGTTCAGCCGGTTTTTGTGTGAGACAATGGTGTCAAAAAGCAGCCTGATAAATCCTGGACATCAAACCGTGCTCAGTGTCTGGCATAATGTTGACTCTGAGAGCTTTTCACCACCGCAAGGTGatgttatatttcttttttttacttgttatatgtattatattttatgtttttatatctttGGGAGCATATTATGTGGACTCGCAAAGAAATGTTTTGCCATCTGGgtcagcaaaaacaaacatcatcAAAGATATTAAGAAGAGGGAATCAGAGCTGGTTGATGATAAACCCCCAGATCTACTGGAAATCAAGAAAACTATTGCTGAGGATCAACAGCCAATCAAAACATATAAGGGTCGAGTGAATCTGCACGTTTTTGAAGACTGTTGCGGTGGATCTCTTGATGAACTTAGGAACAACCTGCTCTATCCGCTATTTCCCAATGTACGTACCACAGTAAGCAGACTTGCTATGGCACCTCAGTGGAGCAATTACGGTCTGAGAATCTTTGGCTACCTTCATCCTGCAGAAACCGATGAATATATTTTTGCCGTTTCCTCTGACGATAACTCAGAGTTCTGGCTCAGTTTAAATGAAAGCCCGGAAAACCTTAAACGCCTCGTCTACGTTGGTGAGACAGGAAATGAATGGACTGCGCCAGGCGAGTATTGGAAATTTGCATCCCAAATATCCACACCTGTCTTGTTGGTGAAagacatgaaatattttttcgaAGTCCTTTTAAAGCAAAGCAGCGGAATGGATCATCTGGAAATAGCTTGGAGTTTAAACCGTGACAATGGCACTTTTTCTGTAATAACCTCTGAGTTTTTGTCATTATATGAAGATGAATCTTCTTTACAAATGGGAGATATTGATCACATACCTCAAACCAAAGCGAGTTACGATAGGCTCCTTGAGGCGATTCCCGTATCACCACATCCTCTTGGAGATATGATCAGAGAAGACCCACGTGATCACATCTATAAACACAAACTGCTAGATGAATCCTACCTGAAAGATTTGTTTCCTGAATGCCCTTACAGTCCAAGTTACATACTCAATAAGCAAATTGGACGATATGAGGGTGTGTATATGATTCAGTTTTCTTCAGTGTACCCAAATGACTACACAAGGCAAACTCATGCAAATAATGATCAGATATGCTTCTACAGACAAGATCCATCTTTTCAGGCAGATAAAGGACTCGCTTCCTATCTGATCGAGGTTGAAGATCCTGAAGTAAAAAAGATAGATACAGGTCCTGAAGGACCTTTCTGGCAGCGCGTCTATGACGTGAAACCCCTCAACGTTGCTTCGCAGCAAACTGCCATCGTGGCAAATTCCTGCAGAACATCTGGAAACATTGTGATGTCCCAGAGTCATGCCATGCCAATCGTTAGAGCCTTTCTAAATGCGCTACATTCAAAAGAAGAGACGCGTGGCTACTCCCTGTTACGTGTGGTAAATGTGGTAAGGCGTGAAGACAAGGATGTGGGCAACCGTTATCTGGTGGAACTAGAACTTGTGGGCCcacagggtcagaaagctcttgttTCACGTTATGTTTATGCATTAGCTGAGAATTCAGGCAAGCAAATGGTCCTCTGCAGTCCACAAGCCTTCAGCTGGAACCCATCTGCTACTGTTCATATTATCGTGGCAGTGAAAAATCAAGCCAGGTGGATCATACAGTTTATTAGGGAAATGGAAAAAGTGTACAGAGCAACTGGGGACAAAAactttaatgtaataattatagaCTACAACAGCTCTGACATTGATATTGAGAAAAGACTCAAAAAGTCAACATTACCAAGCTACAAGTTTAAGAAGATGGATGGTAATTTTCAAAGATCTGGTGGCCTTCAAGCTGGAATAGATCTTGTTGAAGATAAGCACAGTATTCTGTTCCTGTGTGACCTGCACCTCTACTATCCAGTGAATATAATAACCACTATAAGAAAACATTGTGTCGAGGGAAAGATGGTCTATGGTCCTATTGTGATGAGACTGGATTGCGGTGCTTCCCCAAGAGCCCCAACTGGTTTTTGGGAGGTTTCTGGTTATGGTTTGATGGCAATCTACAAGTCAGACATGGATCGTATTGGTGGCATGAACACTGTAGAATTCAAGGACAAATGGGGGGGTGAAGACTGGGAGTTATTAGACAGagtCTTAGAAAATGGGTTAGAGGTGGAACGACTCCATCTCAGAAATTTTTTCCACCATTTTCATTCCAAACGTGGAATGTGGGAAAACAACAATCAAGGCTAAAAGCAAATGAACACGACTTTATTTCCAAACCAGATGAAGGCAAACCTCACCACCACAGATGATTTTGTTGGTCAGTCTAACAACTCAATCGCGCATTCATCTGACAAGAAAAGACTTCATGGATTCAACTGAGAAAAGTCATGGATGGATCTGATTGAGACAACCAGTATAAGCATATGCAACCAACATGCAAAGGGTGTAAGTTAAGGTTAGAGGTTAGCATTTGTTTCAGCATTGTCTAGACAATCAGCCCTGTGATTAACTGGTGGTGTTTCAGCGGTTTAATGAAGGAAGAAATGCTAGTGCTTATGGCAGCATTTACTAGCAGAATGAAGTTGTTGGATGACACTTTTTgtccaaaaatattcatatgttaaaagttaaattaaacacaGTCTCATGCTTACTCACTTCCTTCAAAACATTtgttcatcataaaaaaaaaaaaatcgtatttcCTGCGTTTTTGCATCCataacaaggttttttttttaaaaaacacaaactttagACCTTTAGTCTGGGAAAATAATTAAGTAGGTACATctggtatttttttctttatttacactTCTGTACACACTAAAACAGTTTTGTCGCGTGTTCAGCTTATGGCAgcttttattgatatttttagtttCACCAAGgctgaaatattgtaaaattatatattgttttatgtaagtatatttaaaaaacgtaaTTTATCTTCTGATGGCAAAGCTCAATTTTCAGATGCCATTACTTCAGTTTCACACTTTTTTGATTAATGCATGCAGGCACATGGACTTTTATAgctgttataaaaataataataataaaaaaatctctcttCTGCCTTTGAGTTCATAGTGGACGCTGTGCATTCAAATGTTCTTCAAGGTTGAGTGAGATTAGTTGCAATGAACAAATGGTCTAAAAATATAGTGTGAGCCACTTTAGATGATGCCAACTTTAGACGTCGCTACCCTCTCAACTTACGACTGAAGCCTGTAGAAATGTCCCTTTCTCTCTTACCATATTGAGACAAACAGCTATATACTAATCCATGGTTTTATATAAACGCGGTCCTTCAGCATCCAATCACAATTAAGTAGCGGTAACTTTAATCAATGTGGTGATGAAGTTGTGGTAAcattttgctgtaaatattttcCGGTTCCGAATTTGATCAGATGACTGTACATTATGCAGACTACTtgaataaactgtaataattgtattatgtttaaaatgactatcatttgtgatcatgattaaaaaaatgtttacacttta

Function

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42096 lncRNA downstream 70233 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 70267 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 158679 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 183188 13311873 ~ 13319748 (-) True G28377
TU42040 lncRNA downstream 250902 13250651 ~ 13252034 (-) False G28359
TU42147 lncRNA upstream 96812 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 307292 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 353373 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 356018 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 366627 13880031 ~ 13880847 (-) True G28568
XM_043236773.1 mRNA downstream 8509 13484786 ~ 13494427 (-) True st8sia1
XM_043237134.1 mRNA downstream 32587 13466028 ~ 13470349 (-) True si:ch211-244b2.4
XM_043237136.1 mRNA downstream 32607 13466028 ~ 13470329 (-) False si:ch211-244b2.4
XM_043237133.1 mRNA downstream 32611 13466028 ~ 13470325 (-) False si:ch211-244b2.4
XM_043237135.1 mRNA downstream 32668 13466028 ~ 13470268 (-) False si:ch211-244b2.4
XM_043237996.1 mRNA upstream 122209 13635613 ~ 13648049 (-) True slc6a1l
XM_043237995.1 mRNA upstream 139121 13652525 ~ 13665137 (-) True LOC122343493
XM_043237997.1 mRNA upstream 160867 13674271 ~ 13679088 (-) True pyroxd1
XM_043237707.1 mRNA upstream 169821 13683225 ~ 13687640 (-) True LOC122343316
XM_043237836.1 mRNA upstream 179067 13692471 ~ 13698715 (-) True LOC122343399
TU42098 other downstream 80397 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 140998 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 140998 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 140998 13324525 ~ 13361938 (-) False tmcc3
TU41786 other downstream 1013780 12482102 ~ 12489156 (-) False cpm
XR_006250767.1 other upstream 179541 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 179776 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 302170 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 461953 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 656018 14169422 ~ 14176725 (-) False cerk

Expression Profile